Locus 3794

Sequence ID 2R_DroMel_CAF1
Location 12,530,636 – 12,530,737
Length 101
Max. P 0.999322
window6139

overview

Window 9

Location 12,530,636 – 12,530,737
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 97.21
Mean single sequence MFE -25.54
Consensus MFE -25.70
Energy contribution -25.54
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -2.04
Structure conservation index 1.01
SVM decision value 3.51
SVM RNA-class probability 0.999322
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12530636 101 - 20766785
UCAAUCUGCUCGCGACAGUAAAAAAAAAUCGGAUCGAAGUGUAAAUCGGUGUGAAUUAAAUUAUUCGCUGUGAUGUGAUAAAAGCUAAACGGCAGCGAGUG
.......((((((...............(((.(((((........))))).)))............(((((...((.......))...))))).)))))). ( -25.30)
>DroSec_CAF1 7474 99 - 1
UCAAUCUGCUCGCGACAGUAAA--AAAAUCGGAUCGAAGUGUAAAUCGGUGUGAAUUAAAUUAUUCGCUGUGAUGUGAUAACAACUAAACGGCAGCGAGUG
.......((((((.........--....(((.(((((........))))).)))............(((((...((.......))...))))).)))))). ( -25.60)
>DroSim_CAF1 7636 99 - 1
UCAAUCUGCUCGCGACAGUAAA--AAAAUCGGAUCGAAGUGUAAAUCGGUGUGAAUUAAAUUAUUCGCUGUGAUGUGAUAGAAACUAAACGGCAGCGAGUG
.......((((((.........--....(((.(((((........))))).)))............(((((...((.......))...))))).)))))). ( -25.60)
>DroEre_CAF1 7738 100 - 1
UCAUUCUGCUCGCGACAGUAAAA-AAAAUCGGAUCGAAGUGUAAAUCGGUGUGAAUUAAAUUAUUCGCUGUGAUGUGAUAAAAACUAAACGGCAGCGAGUG
.......((((((..........-....(((.(((((........))))).)))............(((((...((.......))...))))).)))))). ( -25.60)
>DroYak_CAF1 7597 100 - 1
UCAUUCUGCUCGCGACAGUAAAA-AAAAUCGGAUCGAAGUGUAAAUCGGUGUGAAUUAAAUUAUUCGCUGUGAUGUGAUAAAAACUAAACGGCAGCGAGUG
.......((((((..........-....(((.(((((........))))).)))............(((((...((.......))...))))).)))))). ( -25.60)
>consensus
UCAAUCUGCUCGCGACAGUAAAA_AAAAUCGGAUCGAAGUGUAAAUCGGUGUGAAUUAAAUUAUUCGCUGUGAUGUGAUAAAAACUAAACGGCAGCGAGUG
.......((((((...............(((.(((((........))))).)))............(((((...((.......))...))))).)))))). (-25.70 = -25.54 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:14 2006