Locus 3792

Sequence ID 2R_DroMel_CAF1
Location 12,527,937 – 12,528,056
Length 119
Max. P 0.998447
window6137

overview

Window 7

Location 12,527,937 – 12,528,056
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 92.44
Mean single sequence MFE -29.28
Consensus MFE -25.74
Energy contribution -25.94
Covariance contribution 0.20
Combinations/Pair 1.16
Mean z-score -2.30
Structure conservation index 0.88
SVM decision value 3.10
SVM RNA-class probability 0.998447
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12527937 119 - 20766785
GUAUCUAUUAUGUAUAUUGAGUGCUAAACAUAAGAAGCAGGGAUUUUAAAUAUUGUAAAGCUCUGUUUUCGUUAUGUAAGGCACUUUGGUUAAGUAUGUUAUAUACCCUGUAAAUGUUU
((((.((.((((..((..(((((((..(((((((((((((((.(((((.......))))))))))))))..))))))..)))))))....))..)))).)).))))............. ( -27.50)
>DroSec_CAF1 4694 119 - 1
GUAUCAAUUAUGUAUAUUGAGUGCUAGACAUAAGGAGCCGGGAUUUAAAGUAUUUUAAAGCUCUGUUUCCGUUAUGUAAGGCACUUUGGUUAAGUAUGUUAUAUACCCUGUAAAUGUUU
((((....((((..((..(((((((..((((((((((.((((.((((((....))))))..)))).)))).))))))..)))))))....))..))))....))))............. ( -27.10)
>DroSim_CAF1 4847 119 - 1
GUAUCUAUUAUGUAUAUUGAGUGCUAGACAUAAGGAGCAGGGAUUUAAAGUAUUUUAAAGCUCUGUUUCCGUUAUGUAAGGCACUUUGGUUAAGUAUGUUAUAUACCCUGUAAAUGUUU
((((.((.((((..((..(((((((..(((((((((((((((.((((((....)))))).))))).)))).))))))..)))))))....))..)))).)).))))............. ( -31.60)
>DroEre_CAF1 4986 119 - 1
GUAUCUAUUAUGUAUAUUGAGUGCUGAACAUAAGGAACAGGGAGUUAAAGUAUUUUGAAGCUCUGUCUCCGUUAUGUAAGGUACUUUGGUUAAGUAUGUUAUAUACCUUGUAAAUGUUU
((((.((.((((..((..(((((((..(((((((((((((((..(((((....)))))..)))))).))).))))))..)))))))....))..)))).)).))))............. ( -30.40)
>DroYak_CAF1 4843 119 - 1
GUAUCUAUUAUGUAUAUUGAGUGCUGAACAUAGGGAACAGGGAGUUUAAGUAUUUUAAAGCUCUGUUUUCUUUUUGUAAGGUACUUUGGUUAAGUAUGUGAUAUACCCUGUAAAUGUUU
(((((...(((..((...(((((((..(((.((..(((((((..((((((...)))))).)))))))..))...)))..)))))))..))...)))...)))))............... ( -29.80)
>consensus
GUAUCUAUUAUGUAUAUUGAGUGCUAAACAUAAGGAGCAGGGAUUUAAAGUAUUUUAAAGCUCUGUUUCCGUUAUGUAAGGCACUUUGGUUAAGUAUGUUAUAUACCCUGUAAAUGUUU
((((....((((..((..(((((((..(((((((((((((((.((((((....)))))).)))))).))).))))))..)))))))....))..))))....))))............. (-25.74 = -25.94 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:13 2006