| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,525,785 – 12,525,886 |
| Length | 101 |
| Max. P | 0.820761 |
| Location | 12,525,785 – 12,525,886 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 78.28 |
| Mean single sequence MFE | -16.93 |
| Consensus MFE | -10.05 |
| Energy contribution | -10.38 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12525785 101 + 20766785 UUCCAUCAUCAGCUUGGCUUUUUCGCUCAUCAUCUUGUGGCGCGUUAAAAUUCGCUACAAAUC---A-AAUCAAAAAUAAAGCGAAAUAAAGA-----AAA-CA--ACAAU-AU ...........(((((((......))).......((((((((.((....)).))))))))...---.-...........))))..........-----...-..--.....-.. ( -15.00) >DroPse_CAF1 2296 107 + 1 UUCCAUCAUAAGCUUAGCUUUUUCACUCAUUGCCUUGUGGCGCGUUAAAAUUCGCUAUAAAAC---A-AACCAAA-GUAAAGCAAAAAAAACACAAAGAAACCAAAU-CAU-AU ...........((((.(((((..........(((....)))(((........)))........---.-....)))-)).))))........................-...-.. ( -16.30) >DroWil_CAF1 2648 106 + 1 UUCCAUCAUCAGCUUAGCUUUUUCGCUCAUUUCUUUGUGGCGUGUUAAAAUUCGCUAUAAAAUUCCAAAAACAAAAGAAACUC-AAAACAAAU------AACAAAAG-CAUAAA ...........(((((((......)))......(((((((((..........)))))))))......................-.........------.....)))-)..... ( -14.00) >DroYak_CAF1 2645 99 + 1 UUCCAUCAUCAGCUUGGCUUUUUCGCUCAUCAGCUUGUGGCGCGUUAAAAUUCGCUACAAAUC---A-AACCAAAAAUA-AGCCAAAUCAAGA-----AAAUCAAAU-----AU .............(((((((....(((....)))((((((((.((....)).))))))))...---.-..........)-)))))).......-----.........-----.. ( -19.30) >DroAna_CAF1 2453 102 + 1 UUCCAUCAUCAGCUUGGCUUUCUCGCUCAUCGCCUUGUGGCGCGUUAAAAUUCGCUACAAAAC---AAAAUCAAAUGUGAAGC-AAACCAAGG---GGAAAUCAAAU-----UU ((((.......((((.((......((.....)).((((((((.((....)).))))))))...---..........)).))))-...(....)---)))).......-----.. ( -20.70) >DroPer_CAF1 2297 107 + 1 UUCCAUCAUAAGCUUAGCUUUUUCACUCAUUGCCUUGUGGCGCGUUAAAAUUCGCUAUAAAAC---A-AACCAAA-GUAAAGCAAAAAAAACACAAAGAAACCAAAU-CAU-AU ...........((((.(((((..........(((....)))(((........)))........---.-....)))-)).))))........................-...-.. ( -16.30) >consensus UUCCAUCAUCAGCUUAGCUUUUUCGCUCAUCGCCUUGUGGCGCGUUAAAAUUCGCUACAAAAC___A_AACCAAAAGUAAAGC_AAAAAAAGA_____AAACCAAAU_CAU_AU ...........(((((((......))).......((((((((.((....)).))))))))...................))))............................... (-10.05 = -10.38 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:10 2006