| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,524,370 – 12,524,475 |
| Length | 105 |
| Max. P | 0.699134 |
| Location | 12,524,370 – 12,524,475 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 79.73 |
| Mean single sequence MFE | -47.28 |
| Consensus MFE | -32.44 |
| Energy contribution | -33.83 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12524370 105 - 20766785 GUGGCGGCCAACGGUCGUGCGGCCUCGUUGCGGCGGCAGCAGGAUCGUCAUAGGCGACGCCGUCAGAGGCGGGAGCGGCGCUCCCAUUUAUGUCACACUCCCAAU (((((((((.((((((.(((.((((((...))).))).))).))))))....((((....))))...)))((((((...)))))).....))))))......... ( -47.20) >DroPse_CAF1 1008 99 - 1 AUGGUAGCCACAGGACAUGUGGCCUCCAUUCGGCGGCAGCAGGAUCGCCACAAGCGGCGCCACCAUC------AACGGCGCUCCCGCCGGCCCCACUCUCGCACC ((((..((((((.....))))))..))))(((((((.(((......(((......)))(((......------...)))))).)))))))............... ( -41.80) >DroSim_CAF1 1195 105 - 1 CUGGCGGCCAACGGUCGUGCGGCCUCGUUGCGGCGGCAGCAGGAUCGUCAUAGGCGACGCCGUCAGCGGCGGGAGCGGCGCUCCCAUUUAUGUCACUCUCCCAGU ((((.((((.((((((.(((.((((((...))).))).))).))))))....)))(((((((....))))((((((...))))))......))).....))))). ( -50.20) >DroEre_CAF1 1342 105 - 1 CUGGCGGCCACCGGUCGUGCGGCCUCCUUGCGGCGGCAGCAGGAUCGCCACAGGCGACGCCGUCAGCGGCGGGAGCGGCGCUCCCAUUUAUGUCACAGUCCCAGU ((((.(((....((((.(((.(((.((....)).))).))).))))(((...)))(((((((....))))((((((...))))))......)))...))))))). ( -52.00) >DroYak_CAF1 1215 105 - 1 CUGGCGGCCACCGGUCGUGCGGCCUCCUUGCGGCGGCAGCAGGAUCGCCAUAGGCGACGCCGUCAGCGGCGGGAGCGGCGCUCCCAUUUAUGUCACAGUCCCAGU ((((.(((....((((.(((.(((.((....)).))).))).))))(((...)))(((((((....))))((((((...))))))......)))...))))))). ( -52.00) >DroPer_CAF1 1008 99 - 1 AUGGUAGCCACAGGACAUGUGGCCUCCAUUCGGCGGCAGCAGGAUCGCCACAAGCGGCGCCACCAUC------AACGGCGCUCCCGCAGGCCCCACUCUCGCACC ((((..((((((.....))))))..))))..((.(((.((.(((.(((.....)))(((((......------...)))))))).))..)))))........... ( -40.50) >consensus CUGGCGGCCACCGGUCGUGCGGCCUCCUUGCGGCGGCAGCAGGAUCGCCACAGGCGACGCCGUCAGCGGCGGGAGCGGCGCUCCCAUUUAUGUCACACUCCCAGU ((((((((....((((.(((.(((.((....)).))).))).))))(((......)))))))))))....((((((...)))))).................... (-32.44 = -33.83 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:09 2006