Locus 3786

Sequence ID 2R_DroMel_CAF1
Location 12,516,873 – 12,516,976
Length 103
Max. P 0.767528
window6130

overview

Window 0

Location 12,516,873 – 12,516,976
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 96.12
Mean single sequence MFE -20.11
Consensus MFE -16.74
Energy contribution -16.94
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.83
SVM decision value 0.52
SVM RNA-class probability 0.767528
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12516873 103 - 20766785
CCAAAGAGUCGCCUGGCUUAUUAGUCUUUAAUAUUUGAGCUAUCCGUCCGGAUUUGCUGUAAAAUCGUCUCAAGAAUAACAUCUUUAUUCUUAUUUUGAUUCU
.(((((((.((...((((....)))).......(((((((.((((....))))..))).))))..)).)))((((((((.....))))))))..))))..... ( -21.40)
>DroSec_CAF1 51273 103 - 1
CCAAAGAGUCGCCUGGCUUAUUUGUCUUUAAUAUUUGAGAUAUCCGUCCGGAUUUGCUGUAAAAUCGUCUCAAGAAUAACAUCUUUAUUCUUAUUUUGAUUCU
....((((((....(((.....((((((........))))))........(((((......))))))))..((((((((.....)))))))).....)))))) ( -19.30)
>DroSim_CAF1 45940 103 - 1
CCAAAGAGUCGCCUGGCUUAUUUGUCUUUAAUAUUUGAGAUAUCCGUCCGGAUUUGCUGUAAAAUCGUCUCAAGAAUAACAUCUUUAUUCUUAUUUUGAUUCU
....((((((....(((.....((((((........))))))........(((((......))))))))..((((((((.....)))))))).....)))))) ( -19.30)
>DroEre_CAF1 46111 103 - 1
CCAAAGAGUCGCCUGGCUUAUUAGUCUUAAAUAUUUGAGCUAUCCGUCCGGAUUUACUAUAAAACCGUCUCAAGAAUAACAUCUUUAUUCUUAUUUUGAUUCU
.(((((((.((..(((((((...............)))))))(((....))).............)).)))((((((((.....))))))))..))))..... ( -19.26)
>DroYak_CAF1 46887 103 - 1
CCAACGAGUCGCCUGGCUUAUUAGUCUUAAAUAUUUGAGCUAUCCGCCCGGAUUUACUGUAAAAUCGUCUCAAGAAUAACAUCUUUAUUCUUAUUUUGAUUCU
.....(((((.((.(((....(((.(((((....))))))))...))).))....................((((((((.....)))))))).....))))). ( -21.30)
>consensus
CCAAAGAGUCGCCUGGCUUAUUAGUCUUUAAUAUUUGAGCUAUCCGUCCGGAUUUGCUGUAAAAUCGUCUCAAGAAUAACAUCUUUAUUCUUAUUUUGAUUCU
.(((((((.((...(((......))).......((((((..((((....))))...)).))))..)).)))((((((((.....))))))))..))))..... (-16.74 = -16.94 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:05 2006