| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,513,962 – 12,514,076 |
| Length | 114 |
| Max. P | 0.847387 |
| Location | 12,513,962 – 12,514,076 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.54 |
| Mean single sequence MFE | -46.93 |
| Consensus MFE | -26.10 |
| Energy contribution | -26.83 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.847387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12513962 114 - 20766785 UAGAGGCAAGUCAGAUCUCUCCCACCUGACGGCAGAGGAGCUGGGUAGGGGACUUGCGGAUCCUCAGGUGGUUGCUGUGGUGGCCCACGAACUGGGUCACUGGAGGAAUGGACA .........(((..((..(((((((..(((.((.(((((.(((.(.((....))).))).)))))..)).)))...)))((((((((.....)))))))).))))..)).))). ( -45.20) >DroVir_CAF1 71821 114 - 1 UCGUGGCCGGCACAGUCCCGCCCAGAUGCCGGCGGAAGACCAGGGCAAGGGCCUGACCAAUGCGCAGGUGGUCGCUGUAGUUGCCCACGAGCUGGGCCACUGGAAGAAUGGGCA ((((((.(((((((((.(((((........)))))..((((.((((....)))).(((........)))))))))))).)))).)))))).....(((.(.........)))). ( -45.80) >DroSec_CAF1 48362 114 - 1 UAGGGGAAAGUCAGAUCUAUCCCAGCUGACGGCAGAGGAGCUGGGUAGGGGACUGGCAGAUCCUCAGGUGGUUGCUGUGGUGGCCCACGAACUGGGUCACUGGAGGAAUGGACA ..(((((..(((((.(((..(((((((..(......).)))))))...))).)))))...))))).(.(.(((.((.((((((((((.....)))))))))).)).))).).). ( -49.60) >DroEre_CAF1 43225 114 - 1 UAGGGGCAAAGCGGAUCUCUCCCAGUUGUCGCCAGAGGAGCUGGGUAGGGGACUGGCGGAUCCUCAGGUGAUUGCUGUGGUGGCCCAUGAACUGGGCCAUUGGAGGAAUGGACA ..............((..((((((((.((((((.(((((..(.(.(((....))).).).))))).)))))).)))).(((((((((.....)))))))))))))..))..... ( -50.10) >DroYak_CAF1 44080 114 - 1 UAGGGGCAGAGCAGAUACCUCCCAGUUGUCGCCAGAGGAGCUGGGUAGGGGACUGGCGGAUCCUCUGGUGGUUGCUGUGGUGGCCCAUGAACUGGGUCAUUGGAGGAAUGGACA .................(((((((((..(((((((((((..(.(.(((....))).).).)))))))))))..)))).(((((((((.....))))))))))))))........ ( -52.90) >DroAna_CAF1 42773 114 - 1 UAGGGGUAAGCGUGAUGUAUCGGAUUUGUCGCCAGAGGAGAUUGGUAAGGGCUUGCGGGACGAACAGGUGGUCGCGGUGGUGUGCCACGAGCUGGGCCACUGGAGUCACGGACA .....((((((.(....((((((.(((.((....)).))).)))))).).))))))..(((...(((.(((((((.((((....))))..))..))))))))..)))....... ( -38.00) >consensus UAGGGGCAAGCCAGAUCUCUCCCAGUUGUCGCCAGAGGAGCUGGGUAGGGGACUGGCGGAUCCUCAGGUGGUUGCUGUGGUGGCCCACGAACUGGGCCACUGGAGGAAUGGACA ..((((..............(((((((...........)))))))(((....)))......)))).(.(.(((.((.((((((((((.....)))))))))).)).))).).). (-26.10 = -26.83 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:02 2006