| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,510,108 – 12,510,206 |
| Length | 98 |
| Max. P | 0.688346 |
| Location | 12,510,108 – 12,510,206 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 80.17 |
| Mean single sequence MFE | -36.50 |
| Consensus MFE | -17.42 |
| Energy contribution | -17.62 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.688346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12510108 98 - 20766785 -UCCAGCUUGACAUUGUCACGUUCAGG-----UGGCGGAUGCAUUUGCAUUUGCAUUUGCAUUCACCUGCAUUAGUGGCGUCCA---CCCUC-GGGCUGAUGUAAGUG -....(((((.(((((((((...((((-----(((((((((((........)))))))))...)))))).....)))))((((.---.....-)))).))))))))). ( -38.10) >DroSec_CAF1 44517 98 - 1 -UCCAGCUUGACAUUGUCACGUUCAGG-----UGGCGGAUGCAUUUGCAUUUGCAUUUGCAUUCACCUGCAUUAGUGGCGUCCA---CCCUC-GGGCUAAUGUAAGUG -....(((((.(((((((((...((((-----(((((((((((........)))))))))...)))))).....)))))((((.---.....-)))).))))))))). ( -37.70) >DroSim_CAF1 40192 93 - 1 CUCCAGCUUGACAUUGUCACGUUCAGG-----UGGCGGAUGCAUUUGC------AUUUGCAUUCACCUGCAUUAGUGGCGUCCA---CCCUC-GGGCUGAUGUAAGUG .....(((((.(((((((((...((((-----((((((((((....))------))))))...)))))).....)))))((((.---.....-)))).))))))))). ( -36.70) >DroEre_CAF1 39329 92 - 1 -UACAGCUUGACAUUGUCACGUUCAGG-----UGGCGGAUGCAUUUAC------AUUCGCAUUCACCUGCAGUAGUGGCAUCCU---CCGUG-GGGCUGAUGCAAGUG -..((((((.((..((((((...((((-----(((((((((......)------))))))...)))))).....))))))....---..)).-))))))......... ( -34.40) >DroYak_CAF1 40222 92 - 1 -UCCGGCUUGACAUUGUCACGUUCAGG-----UGGCGGAUGCAUUUUC------AUUUGCAUUCACCUGCAUUGGUGGCAAUCA---CCCUC-GGGCUGAUGCAAGUG -..((((((((.((((((((((.((((-----((...((((((.....------...)))))))))))).))..))))))))..---...))-))))))......... ( -32.30) >DroAna_CAF1 38840 102 - 1 CCGUAGCCUGACACUGUCGUGUCCUGGGGCGGCGGCGGCGGGAGAUGC------AUUAGCUUUUACCUGUAUUAGGUGCGUCCACCACCCUCAGGGCUGUGGCAAGUG ((((((((.(((((....)))))((((((.((.((((((((((((.((------....)).))).)))))........)).)).)).))).)))))))))))...... ( -39.80) >consensus _UCCAGCUUGACAUUGUCACGUUCAGG_____UGGCGGAUGCAUUUGC______AUUUGCAUUCACCUGCAUUAGUGGCGUCCA___CCCUC_GGGCUGAUGCAAGUG ....(((.((((...)))).)))..........((.(((((((..............))))))).))(((((((((((...))....((....))))))))))).... (-17.42 = -17.62 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:00 2006