| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,505,311 – 12,505,415 |
| Length | 104 |
| Max. P | 0.652846 |
| Location | 12,505,311 – 12,505,415 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 84.54 |
| Mean single sequence MFE | -36.28 |
| Consensus MFE | -27.24 |
| Energy contribution | -27.60 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12505311 104 - 20766785 UCCCGUUGCAGCACAUUAUGUCACUGCUCGUUGCGGUGCAUGCGGCGUAUACGUGAUGUGCAUUAGCAUAACGCUUUCUGGCACUUUUGGCCACCAGCCAGCAA- .....((((.(((.....((.((((((.....)))))))))))(((......(((.(((((....))))).)))....((((.(....)))))...))).))))- ( -34.00) >DroSec_CAF1 39810 104 - 1 UCCCGUUGCAGCACAUUAUGUCACUGCUCGUUGCGGUGCAUGCGGCGUAUACGUGAUGUGCAUUAGCAUUACUCUUUCUGGCACUUUUGGCCACCCGCCAGCAA- .....((((.(((.....((.((((((.....)))))))))))((((.....(((((((......)))))))......((((.(....)))))..)))).))))- ( -34.40) >DroSim_CAF1 35482 96 - 1 --------UAGCACAUUAUGUCACUGCUCGUUGCGGUGCAUGCGGCGUAUACGUGAUGUGCAUUAGCAUAACGCUUUCGGGCACUUUUGGCCACCAGCCAGCAA- --------..(((((((((((((((((.....)))))).((((...)))))))))))))))....((.....(((....))).....((((.....))))))..- ( -32.60) >DroWil_CAF1 65512 103 - 1 UACUGCUGCUGCACAUUAUGUCACUGGCCAUUGCGGUGCAUGCGGCGUAUACGUGAUGUGCAUUAGCAUAAAGGUUUUUGCCAU-UCUGGCCAAAAGCCAAACA- ...(((((.((((((((((((.....(((..(((...)))...)))....)))))))))))).)))))....((((((((((..-...)).)))))))).....- ( -40.20) >DroAna_CAF1 34240 104 - 1 UCCUGUUGCAGCGCAUUAUGUCACUGUUCGUUGCGGUGCAUGCGGCGUAUACGUGAUGUGCAUUGGCAUAACGCUUUCCGCCAGUUUUGGCCGUGAGCCAGCCC- ..(((.(((.(((((((((((....((.(((((((.....))))))).)))))))))))))....)))....((((.(.(((......))).).)))))))...- ( -34.70) >DroPer_CAF1 34595 104 - 1 UCCUGUUGCUGCACAUUAUGUCACUGUUCGUUGCGGUGCAUGCGGCGAAUACGUGAUGUGCAUUAGCAUAAAGGUUUCUGCCAGU-UUGGCCGUGAGCCAGCCAG ...(((((.((((((((((((....((((((((((.....)))))))))))))))))))))).)))))....((((((.(((...-..))).).)))))...... ( -41.80) >consensus UCCUGUUGCAGCACAUUAUGUCACUGCUCGUUGCGGUGCAUGCGGCGUAUACGUGAUGUGCAUUAGCAUAACGCUUUCUGCCACUUUUGGCCACCAGCCAGCAA_ ..........(((((((((((.......(((((((.....)))))))...)))))))))))....((.....(((....))).....((((.....))))))... (-27.24 = -27.60 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:59 2006