Locus 3777

Sequence ID 2R_DroMel_CAF1
Location 12,490,202 – 12,490,296
Length 94
Max. P 0.904910
window6118

overview

Window 8

Location 12,490,202 – 12,490,296
Length 94
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 91.04
Mean single sequence MFE -22.98
Consensus MFE -18.04
Energy contribution -18.22
Covariance contribution 0.19
Combinations/Pair 1.12
Mean z-score -2.41
Structure conservation index 0.79
SVM decision value 1.04
SVM RNA-class probability 0.904910
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12490202 94 + 20766785
UUAUGAGCCAAUUUGAUGAUAAAUCAAAAUGAGCCUUGUGA-GAGCAUGUGCAACCUUUUAUGUUUUGUGCAGCAUAAAAGGGAGCUGUCAAAAA
...(((((((.((((((.....)))))).)).))..(((..-..)))...((..(((((((((((......)))))))))))..))..))).... ( -26.00)
>DroSec_CAF1 24805 95 + 1
UUAUGCACAAAUUCGAUGAUAAAUCAAAAUGAACCUUGUGAAGAGCAUGUGCAACCUUUUAUGUUUUGUGCAGCAUAAAAGGGAGCUGUCAAAAA
...((((((.....(((.....)))...........(((.....))))))))).(((((((((((......)))))))))))............. ( -22.10)
>DroSim_CAF1 19733 95 + 1
UUAUGCACAAAUUCGAUGAUAAAUCAAAAUGAACCUUGUGAAGAGCAUGUGCAACCUUUUAUGUUUUGUGCAGCAUAAAAGGGAGCUGUCAAAAA
...((((((.....(((.....)))...........(((.....))))))))).(((((((((((......)))))))))))............. ( -22.10)
>DroYak_CAF1 20301 93 + 1
GAAUGAAAAAAUAUGAUUAGAAAUCAAAAUGGACCUUGCGA-GAGCAUGUGCAACCUUUUAUGUUUUGUGCAGCAUA-AGGGGAGCUGUCAAAAA
.............((((.((.........((.((..(((..-..))).)).)).(((((((((((......))))))-)))))..)))))).... ( -21.70)
>consensus
UUAUGAACAAAUUCGAUGAUAAAUCAAAAUGAACCUUGUGA_GAGCAUGUGCAACCUUUUAUGUUUUGUGCAGCAUAAAAGGGAGCUGUCAAAAA
................(((((..((....((.((..(((.....))).)).)).(((((((((((......)))))))))))))..))))).... (-18.04 = -18.22 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:53 2006