Locus 3776

Sequence ID 2R_DroMel_CAF1
Location 12,486,553 – 12,486,658
Length 105
Max. P 0.600770
window6117

overview

Window 7

Location 12,486,553 – 12,486,658
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 92.38
Mean single sequence MFE -24.83
Consensus MFE -22.12
Energy contribution -20.56
Covariance contribution -1.56
Combinations/Pair 1.29
Mean z-score -1.19
Structure conservation index 0.89
SVM decision value 0.14
SVM RNA-class probability 0.600770
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12486553 105 - 20766785
UAGAAGGAAAAUUGGGAAGUUUUUAUUUCGGGAACACUUCUUUGAUUGCGAUGAAAAACUUUUUAUGCAGGCACAAUACAAUCCCCGGCCAAUAUUCUUUCAGUA
..(((((((.((((((((((....)))))((((.........((.((((.((((((....)))))))))).))........))))...))))).))))))).... ( -26.43)
>DroSec_CAF1 21242 105 - 1
UAGAAGGAAAAUCGGGAAGUUUUUAUUUCGGGAAUGCUUCUUUGAUUGCGAUGAAAAACUUUUUAUGCAGGCACAAUACAAUCCCCGGACAAUAUUCUUUCAGUA
..(((((((......(((((....)))))((((.((......((.((((.((((((....)))))))))).)).....)).)))).........))))))).... ( -21.40)
>DroSim_CAF1 16127 105 - 1
UAGAAGGAAAAUCGGGAAGUUUUUAUUUCGGGAAUGCUUCUUUGAUUGCGAUGAAAAACUUUUUAUGCAGGCACAAUACAAUCCCCGGCCAAUAUUCUUUCAGUA
..(((((((.((.(((((((....)))))((((.((......((.((((.((((((....)))))))))).)).....)).))))...)).)).))))))).... ( -23.90)
>DroEre_CAF1 16198 105 - 1
UAGGAGGAAAUUCGGAAAGUUUUUAUUUCGGGAACACUGCUUUGAUUGCGAUGAGGAACUUUUUAUGCUGGCGCAAUACAAUCCCCUGCCAAUAUUCUUUCAGUA
..(((((((....(((((((((((...(((.((.((......)).)).)))..)))))))))))....(((((.............)))))...))))))).... ( -23.42)
>DroYak_CAF1 16563 105 - 1
UAGGAGGGAAUUCGGAAAGUUUUUAUUUCGGGAACACUUCUUUGAUUGCGAUGAGGAACUUUUUAUGCAGGCACAAUACAAUCCCCUGCCAGUAUUCCUUCAGUA
...((((((((.((((((((((((...(((.((.((......)).)).)))..)))))))))))..(((((.............)))))..).)))))))).... ( -29.02)
>consensus
UAGAAGGAAAAUCGGGAAGUUUUUAUUUCGGGAACACUUCUUUGAUUGCGAUGAAAAACUUUUUAUGCAGGCACAAUACAAUCCCCGGCCAAUAUUCUUUCAGUA
..(((((((....(((((((((((...(((.((.((......)).)).)))..))))))))))).....(((...............)))....))))))).... (-22.12 = -20.56 +  -1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:52 2006