Locus 3773

Sequence ID 2R_DroMel_CAF1
Location 12,482,497 – 12,482,595
Length 98
Max. P 0.876202
window6111

overview

Window 1

Location 12,482,497 – 12,482,595
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 94.34
Mean single sequence MFE -18.96
Consensus MFE -16.80
Energy contribution -17.00
Covariance contribution 0.20
Combinations/Pair 1.07
Mean z-score -1.43
Structure conservation index 0.89
SVM decision value 0.89
SVM RNA-class probability 0.876202
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12482497 98 - 20766785
CAGGUCUUAAUAAAUAAUACAUUAAAUAUAAG-UUAUAUCUUUUCUGAGAGAAUAUAAAUAUUCGUAUUUUAUUGAAAUAUCUACCCGGGUUCCGGUCA
.((((.((((((((..((((............-.....((((....))))(((((....)))))))))))))))))...))))..((((...))))... ( -15.10)
>DroSec_CAF1 17106 99 - 1
CAGGUCUUAAUAAAUAAGACAUUAAAUAUGACUUUAUAUCUUUUCUGAGAGAAUAUAAAUAUUCGUAUUUUAUUGAAAUAUCUACCCGGGUUCCGGUCA
...((((((.....))))))...((((((((.(((((((((((....)))).)))))))...))))))))...............((((...))))... ( -18.70)
>DroSim_CAF1 12042 99 - 1
CAGGUCUUAAUAAAUAAGACAUUAAAUAUGACUUUAUAUCUUUUCUGAGAGAAUAUAAAUAUUCGUAUUUUAUUGAAAUAUCUACCCGGGUUCCGGUCA
...((((((.....))))))...((((((((.(((((((((((....)))).)))))))...))))))))...............((((...))))... ( -18.70)
>DroEre_CAF1 12300 99 - 1
UAUGUCUUAAGACAUAAGACAUUAAAUAUGACUUUAUAUCUCUUCUGAGGGCAUAUAAAUAUUCGUAUUUUAUUGAAAUAUCUGCCCGGGUUCCGGUCA
((((((....))))))...((..((((((((.(((((((((((....)))).)))))))...))))))))...))........(.((((...)))).). ( -22.60)
>DroYak_CAF1 12584 99 - 1
CAUGUCUUAAGAAAUAAGACAUUAAAUAUGACUUUAUAUCUUUUCUGAGGGAAUAUAAAUAUUCGUAUUUUAUUGAAAUAUCUGCCCGGGUUCCGGUCA
.((((((((.....)))))))).((((((((.(((((((((((....)))).)))))))...)))))))).............(.((((...)))).). ( -19.70)
>consensus
CAGGUCUUAAUAAAUAAGACAUUAAAUAUGACUUUAUAUCUUUUCUGAGAGAAUAUAAAUAUUCGUAUUUUAUUGAAAUAUCUACCCGGGUUCCGGUCA
...((((((.....))))))...((((((((.(((((((((((....)))).)))))))...))))))))...............((((...))))... (-16.80 = -17.00 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:47 2006