Locus 3772

Sequence ID 2R_DroMel_CAF1
Location 12,478,456 – 12,478,550
Length 94
Max. P 0.931024
window6110

overview

Window 0

Location 12,478,456 – 12,478,550
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 83.57
Mean single sequence MFE -27.03
Consensus MFE -20.02
Energy contribution -20.38
Covariance contribution 0.36
Combinations/Pair 1.14
Mean z-score -2.25
Structure conservation index 0.74
SVM decision value 1.21
SVM RNA-class probability 0.931024
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12478456 94 - 20766785
GCCAGGAUAUGUGUCCUGGCUAUAGCCACACAACCUCGCACUCACAUGGCCGGCUGGCAUCCCUUGCGUAUACGUAAUGCUGCUUUAUUUAUGU
((((((((....))))))))....((((..................)))).(((.(((((....((((....)))))))))))).......... ( -26.17)
>DroSec_CAF1 8031 94 - 1
GCCAGAAUAUGUGUCCUGGCUAUAGCCACACAUCCUCGCACUCACAUGGCCGGCUGGCAUCCCUUGCGUUUACGUAAUGCUGCUUUAUUUAUGU
(((.((..((((((...(((....)))))))))..))((.(......))).))).(((((....((((....)))))))))............. ( -23.40)
>DroSim_CAF1 7990 80 - 1
GCCAGGAUAUGUGUCCUGGCUAUAGCCACA--------------CAUGGCCGGCUAGCAUCCCUUGCGUAUACGUAAUGCUGCUUUAUUUAUGU
((((((((....))))))))....((((..--------------..)))).(((.(((((....((((....)))))))))))).......... ( -28.40)
>DroEre_CAF1 8039 78 - 1
GCCAGGCUAU--GUCCUGGCUAUAGCCACAC--------------AUGGCCGGCUGGCAUCCCUUGCGUAUACGUAAUGGUGCUUUAUUUAUGU
(((.((((((--((..((((....)))).))--------------))))))))).((((.((.(((((....))))).)))))).......... ( -33.70)
>DroYak_CAF1 7808 92 - 1
GCCAGGAUUU--GUUCUGGCUAUAGCCACACAUCCUUGCACUCACAUGUCCGGCUGGCAUCCCUGGCGUAUACGCAAUAGUACUUUAUUUAUGU
((((((...(--((..((((....))))..((.((..(((......)))..)).)))))..))))))((((........))))........... ( -23.50)
>consensus
GCCAGGAUAUGUGUCCUGGCUAUAGCCACACA_CCU_GCACUCACAUGGCCGGCUGGCAUCCCUUGCGUAUACGUAAUGCUGCUUUAUUUAUGU
((((((((....))))))))..(((((........................)))))(((....(((((....)))))...)))........... (-20.02 = -20.38 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:46 2006