| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,444,819 – 12,444,925 |
| Length | 106 |
| Max. P | 0.584036 |
| Location | 12,444,819 – 12,444,925 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 82.22 |
| Mean single sequence MFE | -30.23 |
| Consensus MFE | -19.64 |
| Energy contribution | -19.87 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12444819 106 - 20766785 CCGAUUAGGUCGUAACCACUUGGACAAU--UCACACAAAUCGGUCAAAUCGGCCGAUUUGUUA-UCGCUGCUA-ACGAGUGCGAAAUUGUGGCUCGUUUCAUAAUUCUA---U ..((...((((....((....))(((((--(...(((((((((((.....)))))))))))..-((((..(..-..)...))))))))))))))....)).........---. ( -29.60) >DroSec_CAF1 23417 106 - 1 CCGAUUAGGUCGUAACCACUUGGACAAU--UCACACAAAUUGGCCAAAUCGGCCGAUUUGUUA-UCGCUGCUA-ACGAGUGCGAAAUUGUGGCUCGUUUCAUAAUUCCA---U ..((...((((....((....))(((((--(...(((((((((((.....)))))))))))..-((((..(..-..)...))))))))))))))....)).........---. ( -30.20) >DroSim_CAF1 23925 106 - 1 CCGAUUAGGUCGUAACCACUUGGACAAU--UCACACAAAUCGGCCAAAUCGGCCGAUUUGUUA-UCGCAGCUA-ACGAGUGCGAAAUUGUGGCUCGUUUCAUAAUUCCA---U ..((...((((....((....))(((((--(...(((((((((((.....)))))))))))..-(((((.(..-..)..)))))))))))))))....)).........---. ( -33.30) >DroEre_CAF1 19155 106 - 1 CCGAUUAGGCCGUAGCCACUUGGACAAU--UCACGCAAAUCGGUCAAAUCGGCCGAUUUGUUA-UCGCUGCUA-ACGAGUGCGAAAUUGUGGCUCGUUUCAUAAUUCUG---G (((((((...((.((((((.........--....(((((((((((.....)))))))))))..-((((..(..-..)...))))....)))))))).....)))))..)---) ( -33.90) >DroYak_CAF1 41948 109 - 1 CCGAUUAGGUCGUAACCUCUUGGACAGU--UCACGCAAAUCGGUCAAAUCGGACGAUUUGUUA-UCGCUGCUA-ACGAGUGCGAAAUUGUGGCUCGUUUCAUAAUUCUGUUUG .(((.(((.(((((..(((((((.((((--....((((((((..(.....)..))))))))..-..)))))))-).))))))))((((((((......))))))))))).))) ( -29.40) >DroPer_CAF1 2832 100 - 1 CCGAUUAGGUCGAAACCAAUUCGACAAGCGUCCCACAAAUUGAG-----GGACUG-UCUUUUAGCCACAGAAACCCGAGUGCGAAACUGUCCCGUGGUUU----UUAUA---U ..(((...((((((.....))))))....(((((.(.....).)-----)))).)-))..........(((((((((.(..((....))..))).)))))----))...---. ( -25.00) >consensus CCGAUUAGGUCGUAACCACUUGGACAAU__UCACACAAAUCGGUCAAAUCGGCCGAUUUGUUA_UCGCUGCUA_ACGAGUGCGAAAUUGUGGCUCGUUUCAUAAUUCUA___U ((((...(((....)))..))))...........(((((((((((.....))))))))))).............(((((((((....))).))))))................ (-19.64 = -19.87 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:39 2006