Locus 3763

Sequence ID 2R_DroMel_CAF1
Location 12,434,176 – 12,434,292
Length 116
Max. P 0.995139
window6101

overview

Window 1

Location 12,434,176 – 12,434,292
Length 116
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 70.57
Mean single sequence MFE -35.77
Consensus MFE -18.26
Energy contribution -19.60
Covariance contribution 1.34
Combinations/Pair 1.20
Mean z-score -2.63
Structure conservation index 0.51
SVM decision value 2.55
SVM RNA-class probability 0.995139
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12434176 116 + 20766785
ACCAUUCAUG---CCAAUGAGGGAGCCAAAGUCCAUUGUUCUAGCCAGUUUCUGGUCGGGGCAAGUGGCUUCAACGCUUGCUCUUUGUGCCCCUGCACCUGCCCCUGCCCCUGCAACUG
.........(---((((.(((.((((..(((.(((((((((..(((((...)))))..)))).))))))))....)))).))).))).))...((((...((....))...)))).... ( -36.30)
>DroPse_CAF1 49192 95 + 1
GCUAUUCAUGCUGCCAAUGAUGGACCG------CAUUGUUCUAGGCCAUUUCUGGCCAGGACAAGUGGCCUCAACUCUUGCUCUUUAUACUGCGUUGGCUG------------------
((.......)).((((((((.((.(((------(.(((((((.(((((....)))))))))))))))))))).......((..........))))))))..------------------ ( -35.50)
>DroPer_CAF1 48641 95 + 1
GCUAUUCAUGCUGCCAAUGAUGGACCG------CAUUGUUCUAGGCCAUUUCUGGCCAGGACAAGUGGCCUCAACUCUUGCUCUUUAUACUGCGUUGGCUG------------------
((.......)).((((((((.((.(((------(.(((((((.(((((....)))))))))))))))))))).......((..........))))))))..------------------ ( -35.50)
>consensus
GCUAUUCAUGCUGCCAAUGAUGGACCG______CAUUGUUCUAGGCCAUUUCUGGCCAGGACAAGUGGCCUCAACUCUUGCUCUUUAUACUGCGUUGGCUG__________________
............(((((((.(((............(((((((.(((((....))))))))))))..(((..........))).......)))))))))).................... (-18.26 = -19.60 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:37 2006