| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,406,168 – 12,406,275 |
| Length | 107 |
| Max. P | 0.643704 |
| Location | 12,406,168 – 12,406,275 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 78.72 |
| Mean single sequence MFE | -22.99 |
| Consensus MFE | -15.31 |
| Energy contribution | -16.62 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643704 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12406168 107 - 20766785 CAGUUUGCCGCAAAGGUCAAACUCUGCCCUUUGCCUGGUAUUUU-------UUUCCCCCUUUAUUU-GUUUGAAACUAAAUUGAAAUGUAGUCAAGCUGAUACAUGAUUAUUAGC ((((((((((((((((.((.....)).)))))))..))).....-------........((((...-...))))...))))))............(((((((......))))))) ( -20.00) >DroSec_CAF1 22700 106 - 1 CAGUUCGCCGCAAAGGUCAAACUCUGCCCUUUGCCUGGUAUUU--------UUUCCCCCUUUCUGU-GUUUGAAACUAAAUUGAAAUGUAGGCAAGCUGAUACAUUAUUAUUAGC (((((.((((((((((.((.....)).)))))))....(((((--------(.......((((...-....)))).......))))))..))).)))))................ ( -23.94) >DroSim_CAF1 23274 106 - 1 CAGUUUGCCGCAAAGGUCAAACUCUGCCCUUUGCCUGGUAUUU--------UUUCCCCCUUUCUGU-AUUUGAAACUAAAUUGAAAUGUAGGCAAGCUGAUACAUGAUUAUUAGC ((((((((((((((((.((.....)).)))))))....(((((--------(.......((((...-....)))).......))))))..)))))))))................ ( -28.04) >DroEre_CAF1 27506 114 - 1 CAGUCUGCCGCAAAGGUCAAACUCUGCCCUUUGCCUGCUAUAUUUUCUAUUUUCCCCCAUUUCUGU-GUUUGAAACUAAAUUGAAAUGUAGGCAUGCUGAUACAUGAUUAUUAGC ((((.(((((((((((.((.....)).))))))).......................((((((...-(((((....))))).))))))..)))).))))................ ( -28.00) >DroYak_CAF1 24221 110 - 1 CAGUCUGCCGCAAAGGUCAAACUCUGCCCUUUGCCUGGUAUUUGUU----GUUCCCCCUUUUUUGU-GUUUGAAACUAAAUUGAAAUGUAGGCAAGCUGAUACAUGAUUAUUAGC (((..(((((((((((.((.....)).)))))))............----.............((.-.(((.((......)).)))..))))))..)))................ ( -24.60) >DroAna_CAF1 23890 84 - 1 CAGUCUGUCGGAAAGGUCACAUUCUGCCCUUUUUCUAAAGGUU--------UCUCGU-UUUUCUUUCCUGCGAAAAA----------------------AAACAUGAUUAUUAGC .....(((.(((((((...........(((((....)))))..--------......-...))))))).))).....----------------------................ ( -13.35) >consensus CAGUCUGCCGCAAAGGUCAAACUCUGCCCUUUGCCUGGUAUUU________UUUCCCCCUUUCUGU_GUUUGAAACUAAAUUGAAAUGUAGGCAAGCUGAUACAUGAUUAUUAGC ((((.(((((((((((.((.....)).))))))).........................((((........))))...............)))).))))................ (-15.31 = -16.62 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:33 2006