Locus 3757

Sequence ID	2R_DroMel_CAF1
Location	12,401,447 – 12,401,537
Length	90
Max. P	0.722899

overview

Window 5

Location	12,401,447 – 12,401,537
Length	90
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	89.69
Mean single sequence MFE	-25.09
Consensus MFE	-17.84
Energy contribution	-17.48
Covariance contribution	-0.36
Combinations/Pair	1.17
Mean z-score	-2.19
Structure conservation index	0.71
SVM decision value	0.40
SVM RNA-class probability	0.722899
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12401447 90 + 20766785
GCUAAUGAGGCUCAGAAAGGAGCAAACAGGA--GCGACAAAGGAUAAGGGGAUUACUCUGGCUUCGAGGAGAAAUUCCUGGAGCUGUCAAUG
(((..((..((((......))))...))..)--))(((........((((.....))))(((((((.(((....))).)))))))))).... ( -29.60)
>DroSec_CAF1 18059 89 + 1
GCUAAUGAGGCUCAGAAAGGAGCUAACAGGA--GCGACA-AGGAUAAGGGGAUUGCUCUGGCUUCGAGGAGGAAUUCCUGGAGCUGUCAAUG
(((..((.(((((......)))))..))..)--))((((-.(..(..(((((((.((((........)))).)))))))..).))))).... ( -29.30)
>DroSim_CAF1 18544 89 + 1
GCUAAUGAGGCUCAGAAAGGAGCUAACAGGA--GCGACA-AGGAUAAGGGGAUUACUCUGGCUUCGAGGAGGAAUUCCUGGAGCUGUCAAUG
(((..((.(((((......)))))..))..)--))(((.-......((((.....))))((((((.(((((...)))))))))))))).... ( -29.60)
>DroEre_CAF1 22909 89 + 1
GCUAAUGAGGUUCAGCAAGGAGCAAAUAGGA--GGCACA-AGGAUAAGGGGAUUACUUUGGGGUCGAGGGGAAAUUCCUGGAGCUGUCAAUG
.....((((((((....(((((.........--(((.((-(((.(((.....))))))))..))).........))))).))))).)))... ( -18.77)
>DroYak_CAF1 19379 91 + 1
GCUAAUGAGGCUCAGAAAGGAGCAAACAGGAUAAGAGCA-AGGAUAAGGGGAUUACUUUGGGUUUGGGGAGGAAUUCCAGGAGCUGUCAAUG
.....((((((((........................((-((..(((((......)))))..))))((((....))))..))))).)))... ( -18.20)
>consensus
GCUAAUGAGGCUCAGAAAGGAGCAAACAGGA__GCGACA_AGGAUAAGGGGAUUACUCUGGCUUCGAGGAGGAAUUCCUGGAGCUGUCAAUG
(((......((((......))))........................(((((((.((((........)))).)))))))..)))........ (-17.84 = -17.48 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:31 2006