Locus 3756

Sequence ID 2R_DroMel_CAF1
Location 12,400,448 – 12,400,546
Length 98
Max. P 0.711007
window6094

overview

Window 4

Location 12,400,448 – 12,400,546
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 85.24
Mean single sequence MFE -34.47
Consensus MFE -25.48
Energy contribution -27.38
Covariance contribution 1.91
Combinations/Pair 1.21
Mean z-score -2.71
Structure conservation index 0.74
SVM decision value 0.38
SVM RNA-class probability 0.711007
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12400448 98 + 20766785
AAGUGGAAGUUGGUGUGGCCAGCCGGAAGGGCAAAUGGGGCACGACGUGGUUCGUUCGGGAACAUGAAGCUUCAUAUGGCCGGCUGCAUUAAUAAUGA
........(((((((..(((...(....)(((..(((((((....((((.(((......)))))))..)))))))...))))))..)))))))..... ( -34.50)
>DroSec_CAF1 17108 98 + 1
AAGUGGAAGUUGGUGUGGCCAGCCGGAAGGGCAAAUGGGGCACGACGUGGUUCGUUCGGGAACAUGAAGCUUCAUAUGGCCGGCUGCAUUAAUAAUGA
........(((((((..(((...(....)(((..(((((((....((((.(((......)))))))..)))))))...))))))..)))))))..... ( -34.50)
>DroSim_CAF1 17568 98 + 1
AAGUGGAAGUUGGUGUGGCCAGCCGGAAGGGCAAAUGGGGCACAACGUGGUUCGUUCGGGAACAUGAAGCUUCAUAUGGCCGGCUGCAUUAAUAAUGA
........(((((((..(((...(....)(((..(((((((....((((.(((......)))))))..)))))))...))))))..)))))))..... ( -34.50)
>DroEre_CAF1 21915 98 + 1
AAGUGGAAGUUGGUGUGGCCAGCCGGAAGGGUAAAUGGGGCUCCACUUGGUUCGUUCGGGAAAAUGCAGCCCCAUAUGGCCGGCUGCAUUAAUAAUGA
........(((((((..(((...(....)(((..((((((((.(((((((.....)))))....)).))))))))...))))))..)))))))..... ( -38.90)
>DroYak_CAF1 18383 98 + 1
AAGUGGAAGUUGGUGUGGCCAGCCGGAAGGGCAAAUGGGGCUCGACUUGGUUCGUUCGGGACAACGUAGACCCAUAUGGCCGGCUGCAUUAAUAAUGA
........(((((((..(((.((((...(((...(((..(((((((.......).))))).)..)))...)))...)))).)))..)))))))..... ( -35.20)
>DroPer_CAF1 13245 83 + 1
-----GAAGUUGGUGUGGCCAGCCGGAAGAGGAAGGUGGGACCAGUGUGGC-CAUUC----AUAUGCA----CAUAU-GCGGGCUGCAUUAUUAAUGA
-----......(((.(.(((..((......))..))).).)))((((..((-(...(----((((...----.))))-)..)))..))))........ ( -29.20)
>consensus
AAGUGGAAGUUGGUGUGGCCAGCCGGAAGGGCAAAUGGGGCACGACGUGGUUCGUUCGGGAACAUGAAGCUUCAUAUGGCCGGCUGCAUUAAUAAUGA
........(((((((..(((...(....)(((..(((((((....((((.(((.....))).))))..)))))))...))))))..)))))))..... (-25.48 = -27.38 +   1.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:30 2006