Locus 3755

Sequence ID 2R_DroMel_CAF1
Location 12,392,030 – 12,392,135
Length 105
Max. P 0.691487
window6093

overview

Window 3

Location 12,392,030 – 12,392,135
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 81.68
Mean single sequence MFE -41.22
Consensus MFE -28.13
Energy contribution -30.22
Covariance contribution 2.09
Combinations/Pair 1.25
Mean z-score -1.75
Structure conservation index 0.68
SVM decision value 0.33
SVM RNA-class probability 0.691487
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12392030 105 - 20766785
GUGCCAAGAAAACCGCUUCACACGCUCACCAAUAGCUCAUCCACGCCCAUUUCCGGUUCAUCGUCGAGCGGAAGUGGGGGAGGAGGAGUGGGCAACGGCAACGGU
.((((.......(((((((....(((.......)))...(((.(.((((((((((.(((......))))))))))))).).)))))))))).....))))..... ( -42.30)
>DroSec_CAF1 8945 102 - 1
GUGCCAAGAAAACCGCUUCACACGCUCACCAAUAGCUCCUCCACGCCCAUCUCCGGUUCAUCGUCGAGCGGAAGUGGGGGAGGAGGAGUGGGC---GGCAACGGU
.((((..(((......)))....((((.......((((((((.(.((((..((((.(((......)))))))..)))).).))))))))))))---))))..... ( -44.71)
>DroSim_CAF1 9202 102 - 1
GUGCCAAGAAAACCGCUCCACACGCUCACCAAUAGCUCCUCCACACCAAUCUCCGGUUCAUCGUCGAGUGGAAGUGGGGGAGGUGGAGUGGGC---GGCAACGGU
..(((.......(((((((((..(((.......)))((((((((.(((.((..(((....)))..)).)))..)))))))).)))))))))..---(....)))) ( -43.00)
>DroEre_CAF1 13546 102 - 1
GUGCCCAGGAAACCGCUUCACACGCUCACCAACAGCUCCUCCACGCCCAUCUCCGGUUCAUCCUCGAGCGGAAGUGGGGGAGGACGAGUGGUC---GGAAACGGA
....((.....(((((((.....(((.......)))((((((...((((..((((.(((......)))))))..)))))))))).))))))).---(....))). ( -37.90)
>DroYak_CAF1 9887 102 - 1
GUGCCAAGGAAACCGCUGCACACGCUCACCAACAGCUCCUCCACGCCCAUCUCCGGCUCAUCGUCGAGCGGAAGUGGCGGAGGAGGUGUGGGC---GGAAACGGA
((((...(....)....)))).(((((((....(.(((((((..(((.(..((((.(((......)))))))..))))))))))).)))))))---)........ ( -44.80)
>DroPer_CAF1 5100 99 - 1
GUGCCCCGCAAGCCCCUCCACACGCUGAGCAACUGC---CUCACAUCCACAUCCGCAUCUUCUUCGAGUGGCAGUGGCAGUAGUGGGGGUAGC---GGUAGCAGC
.(((.((((.....(((((((..((((.((....))---.......((((..((((.((......))))))..)))))))).)))))))..))---))..))).. ( -34.60)
>consensus
GUGCCAAGAAAACCGCUUCACACGCUCACCAACAGCUCCUCCACGCCCAUCUCCGGUUCAUCGUCGAGCGGAAGUGGGGGAGGAGGAGUGGGC___GGCAACGGU
.((((.......(((((((....(((.......)))((((((...(((((.((((.(((......))))))).)))))))))))))))))).....))))..... (-28.13 = -30.22 +   2.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:29 2006