Locus 3754

Sequence ID 2R_DroMel_CAF1
Location 12,390,305 – 12,390,407
Length 102
Max. P 0.577646
window6092

overview

Window 2

Location 12,390,305 – 12,390,407
Length 102
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 92.17
Mean single sequence MFE -19.64
Consensus MFE -16.44
Energy contribution -16.24
Covariance contribution -0.20
Combinations/Pair 1.11
Mean z-score -1.30
Structure conservation index 0.84
SVM decision value 0.09
SVM RNA-class probability 0.577646
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12390305 102 - 20766785
UUUAAAUCACCUUCAUUGUACUUGUGUCUGCAUAUUUACUUCUUUUGUGGGCGUUUUUGGCAUUUAAUGCUUUUAAUUCAAAAGAA--AAACUAUGCCAAACAU
......((((.......(((..((((....))))..))).......)))).....((((((((......(((((.....)))))..--.....))))))))... ( -18.76)
>DroSec_CAF1 7190 100 - 1
UUUAAAUCACUUUCAUUGUACUUGUGUCUGCAUAUUUACUU-UUCUGUGGGCGUUUUUGGCAUUUAAUGCU-UUAGUUCAGAAGAA--AAACUAUGCCAAACAU
......((((.......(((..((((....))))..)))..-....)))).....((((((((......((-((......))))..--.....))))))))... ( -18.94)
>DroSim_CAF1 7473 101 - 1
UUGAAAUCACCUUCAUUGUACUUGUGUCUGCAUAUUUACUU-UUCUGUGGGCGUUUUUGGCAUUUAAUGCUUUUAGUUCAGAAGAA--AAACUAUGCCAAACAU
......((((.......(((..((((....))))..)))..-....)))).....((((((((......(((((.....)))))..--.....))))))))... ( -18.44)
>DroEre_CAF1 11801 101 - 1
UUAAAAACACGUUUAUUGUACUUGUGUCUGCAUAUUUACUU-UUGUGUGGGCGUUUUUGGCAUUUAAUGCUUUUAGUUCAGAAGAA--AAACUAUGCCAAACAU
..(((((((((.....)))......(((..((((.......-.))))..)))))))))(((((......(((((.....)))))..--.....)))))...... ( -22.32)
>DroYak_CAF1 8115 103 - 1
UUUAAUUCACCUUCAUUGUAUUUACGUCUGCAUAUUUACUU-GAUUGUGGGCGUUUUUGGCAUUUAAUGCUUUUAGUUCAAAAGAAACAAACUAUGCCAAACAU
.......................(((((..((.(((.....-)))))..))))).((((((((......(((((.....))))).........))))))))... ( -19.76)
>consensus
UUUAAAUCACCUUCAUUGUACUUGUGUCUGCAUAUUUACUU_UUCUGUGGGCGUUUUUGGCAUUUAAUGCUUUUAGUUCAGAAGAA__AAACUAUGCCAAACAU
........................((((..((.............))..))))..((((((((......(((((.....))))).........))))))))... (-16.44 = -16.24 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:28 2006