Locus 3748

Sequence ID 2R_DroMel_CAF1
Location 12,368,733 – 12,368,824
Length 91
Max. P 0.740664
window6085

overview

Window 5

Location 12,368,733 – 12,368,824
Length 91
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 72.07
Mean single sequence MFE -25.22
Consensus MFE -19.75
Energy contribution -19.52
Covariance contribution -0.22
Combinations/Pair 1.07
Mean z-score -0.65
Structure conservation index 0.78
SVM decision value 0.45
SVM RNA-class probability 0.740664
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12368733 91 + 20766785
UGCCAUGGUGCGGAAAUCGAGAUUUCUGCGUGCCCUGGCCAAGCAGUAUUUGCUGUAGUCGCAGCCCC-----CA-----CAGUCC----AAACUCUAAUUCAAA
.((((.(((((((((((....))))))))..))).))))......((....(((((....)))))...-----.)-----).....----............... ( -24.70)
>DroPse_CAF1 52593 81 + 1
CGCCAUGGUGCGCAAGUCUCGCUUCAUUCGCGCCCUGGCCAAGCAGUAUUUGCUGUAGUCGCAGACGCAGA--CG-----CAGGUU----AA-------------
.((((.((((((.(((.....)))....)))))).))))...(((((....))))).(((((....)).))--).-----......----..------------- ( -26.40)
>DroGri_CAF1 8698 84 + 1
CGCCAUGGUGCGAAAGUCGCGCUUCCUGCGCGCCCUGGCCAAGCAGUAUUUGCUGUAGUCGCAG-------CCCAU-CCUCCCCUG----AAACUA---------
.((((.(((((....)).((((.....))))))).))))...(((((....)))))(((..(((-------.....-......)))----..))).--------- ( -27.30)
>DroYak_CAF1 28498 91 + 1
CGCCAUGGUGCGAAAAUCACGGUUUCUGCGUGCCCUGGCCAAGCAGUAUUUGCUGUAGUCGCAGCCCC-----CA-----CAGUCC----AAACUCUAAUUCAAA
.((((.((..((.((((....))))...))..)).))))......((....(((((....)))))...-----.)-----).....----............... ( -22.30)
>DroAna_CAF1 3309 100 + 1
CGCCAUGGUGCGAAAAUCAAGAUUCUUGCGCGCCUUGGCCAAGCAGUAUUUGCUGUAGUCGCAGCCCC-----CCUCCCCCAUUACACAGAAACUCCAAUGCAAG
.((((.((((((.....((((...)))))))))).))))...(((......(((((....)))))...-----................(......)..)))... ( -24.20)
>DroPer_CAF1 52635 81 + 1
CGCCAUGGUGCGCAAGUCUCGCUUCAUUCGCGCCCUGGCCAAGCAGUAUUUGCUGUAGUCGCAGACGCAGA--CG-----CAGGUU----AA-------------
.((((.((((((.(((.....)))....)))))).))))...(((((....))))).(((((....)).))--).-----......----..------------- ( -26.40)
>consensus
CGCCAUGGUGCGAAAAUCACGCUUCCUGCGCGCCCUGGCCAAGCAGUAUUUGCUGUAGUCGCAGCCCC_____CA_____CAGUUC____AAACUC_________
.((((.((((((................)))))).))))...(((((....)))))................................................. (-19.75 = -19.52 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:21 2006