| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,365,574 – 12,365,691 |
| Length | 117 |
| Max. P | 0.663511 |
| Location | 12,365,574 – 12,365,691 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.48 |
| Mean single sequence MFE | -45.10 |
| Consensus MFE | -29.60 |
| Energy contribution | -30.85 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12365574 117 - 20766785 AUUCGAUGGCGUCUGGUUUAGAUUCUGCAAAUCACUGCCAGGCGUCCCCACU---GACUCCUGCGCCGUGUUCGGCGUCAUGCUGAUGAACUGCACGAUCAGCUCCAUGGCGCUGGGCUC .....((((((((((((...((((.....))))...)))))))(((......---)))......)))))((((((((((((((((((..........))))))...)))))))))))).. ( -45.80) >DroVir_CAF1 37414 114 - 1 ----GCUGGCGCCGGC--UAGGUUCUGCAAAUCGCUGCCCGGCGUGACCACAGUUGAUGCUAUCGCGGUGUCCGGCGUCAUGCUGAUAAACUGCAUGAUUAACUCCACGGCACUGGGCUC ----(((((((((.((--..(((...((.....)).)))..))((((....(((....))).)))))))).)))))(((((((.........)))))))....((((......))))... ( -39.00) >DroEre_CAF1 24598 117 - 1 GUUUGGGGGCGUCUGGUUAAGGUUCUGCAAAUCACUGCCAGGAGUCACUACC---GAUGCCAUCGCCGUGUCCGGCGUCAUGCUGAUGAACUGCAUGAUCAGCUCCAUGGCGCUGGGCUC ....((.((((((.(((...(..((((((......)))..)))..)...)))---))))))....))..((((((((((((((((((.(......).))))))...)))))))))))).. ( -48.40) >DroYak_CAF1 25357 117 - 1 GUUCGGCGACGUCUGGUUAAGGUUCUGCAAAUCACUGCCAGGAGUCACCACC---GAUGCCAGCGCCGUGUCCGGCGUCAUGCUGAUGAACUGCAUGAUCAGCUCCAUGGCGCUGGGCUC ....((.(((..(((((...((((.....))))...)))))..))).))...---....(((((((((((...((((((((((.........)))))))..))).))))))))))).... ( -51.30) >DroMoj_CAF1 36254 114 - 1 ----GCUCGCGCCACU--UAUAUUCUGCAAAUCACUUCCCGGCGUUACCACAGUGGACGCUAUUGCCGUGUCCGGUGUCAUGCUGAUGAACUGCAUGAUGAGUUCCACGGCGCUGGGUUC ----((((((((((((--(((....((((..(((.....((((((....(((.(((((((.......))))))).))).)))))).)))..))))..)))))).....))))).)))).. ( -39.90) >DroPer_CAF1 49565 111 - 1 ----AGUGGCGCCCGGC--AGGUUUUGCAGGUCACUUCCAGGCGUCACCACG---GACGCUACCGCCGUGUCCGGCGUCACGCUGAUGAACUGCAUGAUCAACUCGAGGGCGCUGGGUUC ----...(((((((((.--.((((.(((((.(((......(((((.((..((---(((((.......)))))))..)).)))))..))).))))).))))..))...)))))))...... ( -46.20) >consensus ____GGUGGCGCCUGGU_UAGGUUCUGCAAAUCACUGCCAGGCGUCACCACA___GACGCCAUCGCCGUGUCCGGCGUCAUGCUGAUGAACUGCAUGAUCAGCUCCAUGGCGCUGGGCUC .......(((((((((....((((.....))))....))))))))).............(((.(((((((......(((((((.........)))))))......))))))).))).... (-29.60 = -30.85 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:19 2006