Locus 3742

Sequence ID 2R_DroMel_CAF1
Location 12,360,690 – 12,360,797
Length 107
Max. P 0.914637
window6076

overview

Window 6

Location 12,360,690 – 12,360,797
Length 107
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 78.59
Mean single sequence MFE -29.88
Consensus MFE -14.33
Energy contribution -14.22
Covariance contribution -0.11
Combinations/Pair 1.26
Mean z-score -2.61
Structure conservation index 0.48
SVM decision value 1.10
SVM RNA-class probability 0.914637
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12360690 107 - 20766785
UCUAAUCCAACCUGAUGGAUUUCCCGCUGAUGGUGUGGAAAUGGUUGCACAAUUGC-UGCCCUCGCCAUUCAUCAUCCAUACAAAUCCAUCGUCAU---------UCCCCUCCAUUU
.............(((((((((......((((((((((....(((.(((....)))-.)))....)))..))))))).....))))))))).....---------............ ( -28.40)
>DroPse_CAF1 43778 112 - 1
--UCAUCAGGGCUGAUGGAUUUC-CACUUGUGGUGUGGAAAUGGUUGCACAAUGGCCUGCCGUUUCCAUCCAUCUUGAUCACGA--UCAGCAUCAUGCCAGCGCCUCCCCUCGAUGC
--.((((((((((((((((((..-.....((((.(((((((((((.((......))..)))))))))))))))...)))).).)--))))).....((....))....))).)))). ( -37.90)
>DroSec_CAF1 19577 105 - 1
--UAAUCCAACCUGAUGGAUUUCCCACUGAUGGCGUGGAAAUGGUUGCACAAUUGC-UGCUCUCGCCAUUCAUCAUCCAUACAAAUCCACCGUCAU---------UCCCCUCCAUUU
--.((((((......)))))).......(((((((((((((((((.((((....).-)))....))))))...............)))).))))))---------)........... ( -21.76)
>DroSim_CAF1 20027 107 - 1
UCUAAUCCAACUUGAUGGAUUUCCCGCUGAUGGUGUGGAAAUGGUUGCACAAUUGC-UGCUCUCGCCAUUCAUCUUCCAUACAAAUCCAUCGUCAU---------UCCCCUCCAUUU
.............(((((((((....(....)(((((((((((((.((((....).-)))....))))).....))))))))))))))))).....---------............ ( -24.90)
>DroYak_CAF1 20476 107 - 1
UCUAAUCCAACCUGAUGGAUUUCCCGCGGAUGGUGUGGAAAUCGUUGCACAAUUGC-UGCUCUCGCCAUUCAUCAUCCAUACAAAUCCAUCGUCAU---------UCCCCUCCGUUU
.............(((((((((.....(((((((((((.....((.(((....)))-.)).....)))..))))))))....))))))))).....---------............ ( -28.40)
>DroPer_CAF1 43881 112 - 1
--UCAUCAGGGCUGAUGGAUUUC-CACUUGUGGUGUGGAAAUGGUUGCACAAUGGCCUGCCGUUUCCAUCCAUCUUGAUCACGA--UCAGCAUCAUGCCAGCGCCUCCCCUCGAUGC
--.((((((((((((((((((..-.....((((.(((((((((((.((......))..)))))))))))))))...)))).).)--))))).....((....))....))).)))). ( -37.90)
>consensus
__UAAUCCAACCUGAUGGAUUUCCCACUGAUGGUGUGGAAAUGGUUGCACAAUUGC_UGCCCUCGCCAUUCAUCAUCCAUACAAAUCCAUCGUCAU_________UCCCCUCCAUUU
............((.(((((((......(((((.((((....(((.((......))..)))....)))))))))........))))))).))......................... (-14.33 = -14.22 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:12 2006