Locus 3738

Sequence ID 2R_DroMel_CAF1
Location 12,352,225 – 12,352,327
Length 102
Max. P 0.683664
window6071

overview

Window 1

Location 12,352,225 – 12,352,327
Length 102
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 84.36
Mean single sequence MFE -28.08
Consensus MFE -15.80
Energy contribution -17.30
Covariance contribution 1.50
Combinations/Pair 1.21
Mean z-score -2.58
Structure conservation index 0.56
SVM decision value 0.31
SVM RNA-class probability 0.683664
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12352225 102 - 20766785
UUGCAAAAGUCGUUUGGCAUAUGUGUACAAUGUACACACACAUAUGUAUAUAUAUAUAUCCAGAUGCUAUAUCGCCAU-------AUAGUGAGGGGCGUAGAGUUCACU
((((.......((((((.(((((((((((((((......)))).)))))))))))....))))))(((...((((...-------...))))..)))))))........ ( -25.90)
>DroSec_CAF1 11401 102 - 1
UUACAAAAGUCGUUUGGCAUAUGUGUACAAUGUACAUACAUGUGUAUAUAUGUAUAUAUCCAGAUGCUAUAUCGCCAU-------AUAGUGAGGGGCGUAGAGUUCACU
((((.......((((((...(((((((((((((((((....)))))))).)))))))))))))))(((...((((...-------...))))..)))))))........ ( -28.90)
>DroSim_CAF1 11790 102 - 1
UUACAAAAGUCGUUUGGCAUAUGUGUACAAUGUACAUACAUGUGUAUAUAUGUAUAUAUCCAGAUGCUAUAUCGCCAU-------AUAGUGAGGGGCGUAGAGUUCACU
((((.......((((((...(((((((((((((((((....)))))))).)))))))))))))))(((...((((...-------...))))..)))))))........ ( -28.90)
>DroEre_CAF1 12677 103 - 1
UAACAAAAGUCGUUUGGUAUAUGUUUACAAUGUAUGUACGUAUGUACAUAU------GGCCAGAUGAUAUAUGCCCAUAUACCAUAUACUGAGGGGCGUAGAGUUCACU
.(((....((((((((((((((((..(((((((....)))).)))))))))------.)))))))))).(((((((.................)))))))..))).... ( -28.63)
>consensus
UUACAAAAGUCGUUUGGCAUAUGUGUACAAUGUACAUACAUAUGUAUAUAUGUAUAUAUCCAGAUGCUAUAUCGCCAU_______AUAGUGAGGGGCGUAGAGUUCACU
..........(((((((...(((((((((((((((((....)))))))).))))))))))))))))...........................((((.....))))... (-15.80 = -17.30 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:07 2006