Locus 3737

Sequence ID 2R_DroMel_CAF1
Location 12,350,637 – 12,350,728
Length 91
Max. P 0.500000
window6070

overview

Window 0

Location 12,350,637 – 12,350,728
Length 91
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 87.79
Mean single sequence MFE -23.68
Consensus MFE -18.27
Energy contribution -16.91
Covariance contribution -1.36
Combinations/Pair 1.26
Mean z-score -1.45
Structure conservation index 0.77
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12350637 91 + 20766785
GGUGGAAUCUCUGGGCUUAAAUAAUUUGUAACUGCGGUGUAAGAAAUAGCACGGGUUGGCAAAGAU--------AUGUGGCAGCCUAGAAACUGUGUAA--
.........((((((((...(((.(((((((((...((((.(....).)))).)))).)))))...--------.)))...))))))))..........-- ( -21.30)
>DroSec_CAF1 9880 91 + 1
GGUGGAAUCUCUGGGCUUAAAUAAUUUGUAACUGCGGUGUAAGAAAUAGCACGGGUUGGCAAAGAU--------AUGUGGCAGCCUAGGAACCAAGUAG--
..(((..((.(((((((...(((.(((((((((...((((.(....).)))).)))).)))))...--------.)))...))))))))).))).....-- ( -23.10)
>DroSim_CAF1 10317 91 + 1
GGUGGAAUCUCUGGGCUUAAAUAAUUUGUAACUGCGGUGUAAGAAAUAGCACGGGUUGGCAAAGAU--------AUGUGGCAGCCUAGGAACCAAGUAG--
..(((..((.(((((((...(((.(((((((((...((((.(....).)))).)))).)))))...--------.)))...))))))))).))).....-- ( -23.10)
>DroEre_CAF1 11108 99 + 1
GUCGGAGUCUCUGGGCUUAAAUAAUUUGUAACUGCGGUGUAAGAAAUAGCACAGGUUGGCAAAGAUAGGAUCGUAUGUGGCAGCCUAGAAACUGAGUAG--
.....(((.((((((((...(((.(((((((((...((((.(....).)))).)))).)))))(((...)))...)))...)))))))).)))......-- ( -25.70)
>DroYak_CAF1 10081 93 + 1
GACGGAAUCUCUGGGCUUAAAUAAUUUGUAACUGCGGUGUAAGAAAUAGCACAGCUUGGCAAAGAU--------AUUUCCCAGUCUAGAAACUGAGUCUUA
(((......((((((((.(((((.(((((....((.((((.(....).)))).))...)))))..)--------))))...))))))))......)))... ( -25.20)
>consensus
GGUGGAAUCUCUGGGCUUAAAUAAUUUGUAACUGCGGUGUAAGAAAUAGCACGGGUUGGCAAAGAU________AUGUGGCAGCCUAGAAACUGAGUAG__
..(((....((((((((.......(((((..(((.(.(((.....))).).)))....)))))..................))))))))..)))....... (-18.27 = -16.91 +  -1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:06 2006