Locus 373

Sequence ID 2R_DroMel_CAF1
Location 2,357,634 – 2,357,754
Length 120
Max. P 0.985091
window732

overview

Window 2

Location 2,357,634 – 2,357,754
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.25
Mean single sequence MFE -36.44
Consensus MFE -32.86
Energy contribution -33.18
Covariance contribution 0.32
Combinations/Pair 1.06
Mean z-score -1.81
Structure conservation index 0.90
SVM decision value 2.00
SVM RNA-class probability 0.985091
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2357634 120 + 20766785
AUUCCGGCAAUCUGUCCGGCGGGCGGGGAUAUCACUGCCAAAAAGACAUUUAAUACACGCAAAUAAAUAUCGCCGGCGAGUCUCGUGUGCAGUGUACACAGACCGGAAACAGAAAGGCUA
.....(((..((((((((((.(((((........))))).....((.(((((...........))))).)))))))((.((((.((((((...))))))))))))...)))))...))). ( -40.40)
>DroSec_CAF1 7155 120 + 1
AUUCCGGCAAUCUGUCCGGCGGGCGGGGAUAUCACUGCCAAAAAGACAUUUAAUACACGCAAAUAAAUAUCGCCGGCGACUCUCGUGUGCAGUGUACACAGACCGGAAACAGAAAGGCUA
.((((((.....((.(((((.(((((........))))).....((.(((((...........))))).)))))))))..(((.((((((...)))))))))))))))............ ( -36.80)
>DroSim_CAF1 7259 120 + 1
AUUCCGGCAAUCUGUCCGGCGGGCGGGGAUAUCACUGCCAAAAAGACAUUUAAUACACGCAAAUAAAUAUCGUCGGCGACUCUCGUGUGCAGUGUACACAGACCGGAAACAGAAAGGCUA
.....(((..((((((((((.(((((........)))))..............((((((((........(((....)))........))).)))))....).)))))..))))...))). ( -34.69)
>DroEre_CAF1 7472 120 + 1
AUUCCGGCAAUCUGUCCGGCGGGCGGGGAUAUCACUGCCAAAAAGACAUUUAAUACACGCAAAUAAAUAUCGCCGGCGACUCUCGUGUGCAGCGCACACAGACCGGAAACAGAAAGGCUA
.((((((.....((.(((((.(((((........))))).....((.(((((...........))))).)))))))))..(((.((((((...)))))))))))))))............ ( -38.80)
>DroYak_CAF1 6838 120 + 1
AUUCCGGCAAUCUGUCCGGCGAGCGGGGAUAUCACUGCCAAAAGGACAUUUAAUACACGCAAAUAAAUAUCGCCGACGACUCUCGUGUGCAGCGAACACAGCCCGGAAACGGAAAGACUA
.(((((((.....(((((((((((((........)))).........(((((...........))))).))))))..)))....((((.......)))).))).(....)))))...... ( -31.50)
>consensus
AUUCCGGCAAUCUGUCCGGCGGGCGGGGAUAUCACUGCCAAAAAGACAUUUAAUACACGCAAAUAAAUAUCGCCGGCGACUCUCGUGUGCAGUGUACACAGACCGGAAACAGAAAGGCUA
.(((((((....((.(((((.(((((........))))).....((.(((((...........))))).)))))))))......((((((...)))))).).))))))............ (-32.86 = -33.18 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:44 2006