Locus 3725

Sequence ID 2R_DroMel_CAF1
Location 12,332,011 – 12,332,125
Length 114
Max. P 0.804480
window6051

overview

Window 1

Location 12,332,011 – 12,332,125
Length 114
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.06
Mean single sequence MFE -31.99
Consensus MFE -22.81
Energy contribution -22.32
Covariance contribution -0.49
Combinations/Pair 1.37
Mean z-score -1.15
Structure conservation index 0.71
SVM decision value 0.63
SVM RNA-class probability 0.804480
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12332011 114 + 20766785
AUAACGACAAUGCCACUAUCAACUGUGCUGCCAGAUAUAUGGGAGCCUGGUGGUACAGAGAAUGCCUUAGCAGGUAAGGUUUUUGACCUUUUCCCAAGAUUCCAAG------AUCAUAGU
.......(((.(((........((((((..((((............))))..))))))....(((((....))))).)))..)))............((((....)------)))..... ( -28.50)
>DroSec_CAF1 30705 109 + 1
AUAACGACAAUGCCACUAUCAACUGUGCCGCCAGAUACAUGGGAGCCUGGUGGUACAGGGAAUGUCUUAGCAGGUAA---UAUUGCCCAUUUCCG--CAUCCCAAG------AUCGUAGU
...(((((..............((((((((((((............))))))))))))((.((((.......((((.---...)))).......)--))).))..)------.))))... ( -31.94)
>DroSim_CAF1 29156 112 + 1
AUAACGACAAUGCCACCAUCAACUGUGCCGCCAGAUACAUGGGAGCCUGGUGGUACAGAGAAUGUCUUAGCAGGUACGGUUUUUGCCCUUGCCCC--GAUCCCAAG------AUCGUAGU
.....(((((((....)))...((((((((((((............))))))))))))....))))...(((((...(((....))))))))..(--((((....)------)))).... ( -35.00)
>DroEre_CAF1 30627 112 + 1
ACAACGACAAUGCCACUAUCAACUGUGCCGCCAGAUACAUAGGAGCCUGGUGGUACAGGGAAUGUCUUGGCAGGUAAGGUUUUUGCCCUUUUCCG--GAGCCCAGA------ACCAACAU
..........(((((....((.((((((((((((............))))))))))))....))...))))).....((((((.((((......)--).))..)))------)))..... ( -36.80)
>DroYak_CAF1 30176 112 + 1
AUAACGACAAUGCCACCAUCAAUUGUGCCGCCAGAUACAUGGGAGCUUGGUGGUACAGGGAAUGUCUGGGCAGGUAAGGAUUUUACCCUUUUUUG--AAUCCCAGG------AUCACCAU
..........((((((((........((..(((......)))..)).))))))))..((((...((((((((((.((((.......)))).))))--...))))))------.)).)).. ( -32.30)
>DroAna_CAF1 28181 108 + 1
AUAACGAUCGUAGUAACAUUAAUUGUGCCGCCAAAUAUUUUGGGGCCUGGUGGUACAACGACUGCAUGGCCAGGUAAUUAUU----------CAA--GACUACAAGUUGUGGAACUUUUU
(((((....(((((...........((((.((((.....))))((((..(..((......))..)..)))).))))......----------...--.)))))..))))).......... ( -27.40)
>consensus
AUAACGACAAUGCCACCAUCAACUGUGCCGCCAGAUACAUGGGAGCCUGGUGGUACAGGGAAUGUCUUAGCAGGUAAGGUUUUUGCCCUUUUCCG__GAUCCCAAG______AUCAUAGU
..........((((........((((((((((((............))))))))))))....(((....)))))))............................................ (-22.81 = -22.32 +  -0.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:48 2006