| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,331,424 – 12,331,540 |
| Length | 116 |
| Max. P | 0.552436 |
| Location | 12,331,424 – 12,331,540 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.03 |
| Mean single sequence MFE | -32.35 |
| Consensus MFE | -23.03 |
| Energy contribution | -23.95 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12331424 116 - 20766785 CAGCGCUGGCCAAAUAGAAAAGGCCUAGCGAAAAUACGCAGAGUGCGAAGCAAAUGGGUUUCAUUGUGUUGGCUCGAAACGACUAUCAAAUCAGUUGGCCAAGACAAA----CCAUUUUA ..(((((((((..........))))..(((......)))..)))))(((((......))))).((((.(((((......(((((........)))))))))).)))).----........ ( -34.50) >DroSec_CAF1 30118 116 - 1 CAGCACUGGCCAAAUAGAAAAGGCCUAGCGAAACUACGCAGAGUGCGAAGCAAAUGGGUUUCAUUGUGUUGGCUCGAAACGACUAUCAAAUCAGUUGGCCAAGACACU----CCAUUUUA ..(((((((((..........))))..(((......)))..)))))(((((......)))))..(((.(((((......(((((........)))))))))).)))..----........ ( -33.60) >DroSim_CAF1 28569 116 - 1 CAGCACUGGCCAAAUAGAAAAGGCCUAGCGAAAAUACGCAGAGUGCGAAGCAAAUGGGUUUCAUUGUCUUGGCUCGAAACGACUAUCAAAUCAGUUGGCCAAGACACU----CCAUUUUA ..(((((((((..........))))..(((......)))..)))))(((((......)))))..(((((((((......(((((........))))))))))))))..----........ ( -37.70) >DroEre_CAF1 30040 116 - 1 CAGCACUGGCCAAAUAGAAAAGGCCUAGCGAAAAUACGCAGAGUGCGAAGCAAAUGGGUUUCAUUGUGUUGGCUCGGAACGACUAUCAAAUCAGUUGGCCAAGACCCU----CCAUUUUA ..(((((((((..........))))..(((......)))..)))))(((((......)))))...((.(((((......(((((........)))))))))).))...----........ ( -32.10) >DroYak_CAF1 29589 116 - 1 CAGCACUGGCCAAAUAGAAAAGACCCAGCGAAAAGACGCAGAGUGCGAAGCAAAUGGGUUUCAUUGUGUUGGCUCGAAACGACUAUCAAAUCAGUUGGCCAAGACACA----CCAUUUUA ......(((((((...((..((((((((((......)))....(((...)))..)))))))..(((.((((........))))...))).))..))))))).......----........ ( -28.40) >DroAna_CAF1 27591 113 - 1 CCGCACUGGACGCAAAAGCGAGGCACAGCGAAACUACCGAGAGUACACACAAAGUGGCUUUCAUUUUGUUGG-----AAUAAUUAU--AACUAGAAAGCCAAGAGGAAGGGUCUCGUUUA ..((.......))..(((((((((.((((((((.....((((((.(((.....))))))))).)))))))).-----.........--..........((........))))))))))). ( -27.80) >consensus CAGCACUGGCCAAAUAGAAAAGGCCUAGCGAAAAUACGCAGAGUGCGAAGCAAAUGGGUUUCAUUGUGUUGGCUCGAAACGACUAUCAAAUCAGUUGGCCAAGACACA____CCAUUUUA ..(((((((((..........))))..(((......)))..))))).....((((((.......(((.(((((......(((((........)))))))))).)))......)))))).. (-23.03 = -23.95 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:47 2006