Locus 3722

Sequence ID 2R_DroMel_CAF1
Location 12,328,944 – 12,329,064
Length 120
Max. P 0.961459
window6048

overview

Window 8

Location 12,328,944 – 12,329,064
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.78
Mean single sequence MFE -24.86
Consensus MFE -20.28
Energy contribution -20.24
Covariance contribution -0.04
Combinations/Pair 1.05
Mean z-score -2.04
Structure conservation index 0.82
SVM decision value 1.53
SVM RNA-class probability 0.961459
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12328944 120 + 20766785
CUGCUAGUGGAGCUCGGCAAUCACAAAUUGUUGCCCACAGCCCAGGCCCAUUAUUUGCCCUACCACGUGUGAAAUAUUUUCACAUGCCACUUCAUUUAUUUACUUCACCACUGCGCCAAA
..((((((((.(((.((((((........))))))...)))...(((.........)))......((((((((.....)))))))).....................)))))).)).... ( -28.60)
>DroSec_CAF1 27684 114 + 1
CAGCUAGUGGAGCUCCGCAAUCACAAAUUGUUGCCCACAGC------CCAUUAUUUGCCCUACCACGUGUGAAAUAUUUUCACAUGCCACUUCAUUUAUUUACUUCAGCACUGCGCCAAA
..((((((((.(((..(((((........)))))....)))------))))).............((((((((.....))))))))....................)))........... ( -22.70)
>DroSim_CAF1 25850 114 + 1
CAGCUAGUGGAGCUCCGCAAUCACAAAUUGUUGCCCACAGC------CCAUUAUUUGCCCUACCACGUGUGAAAUAUUUUCACAUGCCACUUCAUUUAUUUACUUCAGCACUGCGCCAAA
..((((((((.(((..(((((........)))))....)))------))))).............((((((((.....))))))))....................)))........... ( -22.70)
>DroEre_CAF1 27930 114 + 1
CAGCUAGUGGAGCUCCACAAUCACAAAUUGUUGCCCACAGC------GCAUUAUUUGCCCUACCACGUGUGAAAUAUUUUCCCAUGCCACUUCAUUUAUGUACUUCAGCACUGUGCGAAA
..(((.((((.((...(((((.....))))).)))))))))------(((.....)))....(((((((((((.(((......(((......)))....))).)))).))).))).)... ( -23.70)
>DroYak_CAF1 27055 112 + 1
CAGCUAGUGGUGCUCCACAAUCACAAAUUGUUGCCCACAGC------GCAUUAUUUGCCCUACCACGUGUGAAAUAUUUUCACAUGCCACUUUAUUUAUGUACUUCAGCACUG--CAAAA
..(((.((((.((...(((((.....))))).)))))))))------......(((((.......((((((((.....))))))))............(((......)))..)--)))). ( -26.60)
>consensus
CAGCUAGUGGAGCUCCGCAAUCACAAAUUGUUGCCCACAGC______CCAUUAUUUGCCCUACCACGUGUGAAAUAUUUUCACAUGCCACUUCAUUUAUUUACUUCAGCACUGCGCCAAA
..(((.((((.((...(((((.....))))).)))))))))........................((((((((.....)))))))).................................. (-20.28 = -20.24 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:45 2006