Locus 3721

Sequence ID 2R_DroMel_CAF1
Location 12,327,462 – 12,327,553
Length 91
Max. P 0.740987
window6046 window6047

overview

Window 6

Location 12,327,462 – 12,327,553
Length 91
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.70
Mean single sequence MFE -21.92
Consensus MFE -19.05
Energy contribution -18.72
Covariance contribution -0.33
Combinations/Pair 1.15
Mean z-score -1.50
Structure conservation index 0.87
SVM decision value 0.18
SVM RNA-class probability 0.620812
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12327462 91 + 20766785
-----------------------------AAAAAGGAGAAACAGGCAUGUUGAACAAGCGAUGUCGCCCGUCUUGUAAAACCUGCAACACAUGCAACAUGCAACUUGCAACUUGCAUCAG
-----------------------------........((.....((((((((.....(((....)))..((.(((((.....))))).))...))))))))....(((.....))))).. ( -21.80)
>DroSec_CAF1 26188 91 + 1
-----------------------------AAAAAGGAGAAACAGGCAUGUUGAACAAGUGAUGUCGCUCGUCUUGUAAAACCUGCAACACAUGCAACAUGCAACUUGCAACUUGCAUCAG
-----------------------------...............(((.((((..(((((.((((.((..((.(((((.....))))).))..)).))))...))))))))).)))..... ( -21.60)
>DroSim_CAF1 24370 91 + 1
-----------------------------AAAAAGGAGAAACAGGCAUGUUGAACAAGCGAUGUCGCCCGUCUUGUAAAACCUGCAACACAUGCAACAUGCAACUAGCAACUUGCAUCAG
-----------------------------........((.....((((((((.....(((....)))..((.(((((.....))))).))...)))))))).....((.....)).)).. ( -21.30)
>DroEre_CAF1 26456 91 + 1
-----------------------------GAAAAGGAGGUACAGGCAUGUUGAACAAGCGAUGUCGCCCGUCUUGUAAAACCUGCAACACAUGCAACAUGUAACUUGCAACUUGCAUCAG
-----------------------------((..(((..(((...((((((((.....(((....)))..((.(((((.....))))).))...))))))))....)))..)))...)).. ( -21.60)
>DroYak_CAF1 25573 91 + 1
-----------------------------GAAAAGGAGGCACAGGCAUGUUGAACAAGCGAUGUCGCCCGUCUUGUAAAACCUGCAACACAUGCAACAUGUAACUUGCAACUUGCAUCAG
-----------------------------((..(((..(((...((((((((.....(((....)))..((.(((((.....))))).))...))))))))....)))..)))...)).. ( -23.60)
>DroAna_CAF1 24008 119 + 1
AAAUAUACAACACAUAUAUACCUACAAAUAAAAAGGAGAAACAGGCAUGUUGAACAAGCCUUGUCGCUCGUCUUGUAAAACCUGCAACACAUGCAACAUGCAACUUGCAACUCGUC-CGG
.....(((((.((...(((........))).....(((..((((((.((.....)).))).)))..))))).))))).....(((((....(((.....)))..))))).......-... ( -21.60)
>consensus
_____________________________AAAAAGGAGAAACAGGCAUGUUGAACAAGCGAUGUCGCCCGUCUUGUAAAACCUGCAACACAUGCAACAUGCAACUUGCAACUUGCAUCAG
............................................((((((((.....(((....)))..((.(((((.....))))).))...)))))))).....((.....))..... (-19.05 = -18.72 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 12,327,462 – 12,327,553
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.70
Mean single sequence MFE -26.92
Consensus MFE -23.53
Energy contribution -24.34
Covariance contribution 0.81
Combinations/Pair 1.08
Mean z-score -1.66
Structure conservation index 0.87
SVM decision value 0.45
SVM RNA-class probability 0.740987
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12327462 91 - 20766785
CUGAUGCAAGUUGCAAGUUGCAUGUUGCAUGUGUUGCAGGUUUUACAAGACGGGCGACAUCGCUUGUUCAACAUGCCUGUUUCUCCUUUUU-----------------------------
...((((((..(((.....)))..))))))..(..((((((.......((((((((....))))))))......))))))..)........----------------------------- ( -29.12)
>DroSec_CAF1 26188 91 - 1
CUGAUGCAAGUUGCAAGUUGCAUGUUGCAUGUGUUGCAGGUUUUACAAGACGAGCGACAUCACUUGUUCAACAUGCCUGUUUCUCCUUUUU-----------------------------
...((((((..(((.....)))..))))))..(..((((((.......((((((.(....).))))))......))))))..)........----------------------------- ( -24.52)
>DroSim_CAF1 24370 91 - 1
CUGAUGCAAGUUGCUAGUUGCAUGUUGCAUGUGUUGCAGGUUUUACAAGACGGGCGACAUCGCUUGUUCAACAUGCCUGUUUCUCCUUUUU-----------------------------
...((((((..(((.....)))..))))))..(..((((((.......((((((((....))))))))......))))))..)........----------------------------- ( -29.32)
>DroEre_CAF1 26456 91 - 1
CUGAUGCAAGUUGCAAGUUACAUGUUGCAUGUGUUGCAGGUUUUACAAGACGGGCGACAUCGCUUGUUCAACAUGCCUGUACCUCCUUUUC-----------------------------
.....(((...(((((........)))))..)))(((((((.......((((((((....))))))))......)))))))..........----------------------------- ( -25.12)
>DroYak_CAF1 25573 91 - 1
CUGAUGCAAGUUGCAAGUUACAUGUUGCAUGUGUUGCAGGUUUUACAAGACGGGCGACAUCGCUUGUUCAACAUGCCUGUGCCUCCUUUUC-----------------------------
..((((((...(((((........)))))))))))((((((.......((((((((....))))))))......))))))...........----------------------------- ( -25.02)
>DroAna_CAF1 24008 119 - 1
CCG-GACGAGUUGCAAGUUGCAUGUUGCAUGUGUUGCAGGUUUUACAAGACGAGCGACAAGGCUUGUUCAACAUGCCUGUUUCUCCUUUUUAUUUGUAGGUAUAUAUGUGUUGUAUAUUU
..(-((((((((((.....)).((((((.(((.(((.........))).))).)))))).)))))))))...(((((((.................)))))))................. ( -28.43)
>consensus
CUGAUGCAAGUUGCAAGUUGCAUGUUGCAUGUGUUGCAGGUUUUACAAGACGGGCGACAUCGCUUGUUCAACAUGCCUGUUUCUCCUUUUU_____________________________
...((((((..(((.....)))..))))))..(..((((((.......((((((((....))))))))......))))))..)..................................... (-23.53 = -24.34 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:44 2006