Locus 372

Sequence ID 2R_DroMel_CAF1
Location 2,357,481 – 2,357,594
Length 113
Max. P 0.915221
window731

overview

Window 1

Location 2,357,481 – 2,357,594
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.83
Mean single sequence MFE -29.66
Consensus MFE -24.78
Energy contribution -24.54
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.70
Structure conservation index 0.84
SVM decision value 1.10
SVM RNA-class probability 0.915221
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2357481 113 + 20766785
AAGUCAUCAUCGUCGGCCACGUGAAAUAGCGAAAGUUUACCUCACAACUACCACAUAUUUUACAGAUGUCAGA-------UAGCGCGUAUGCGGGCUACGAACUUCCUAAUCCUGGCCAA
..............(((((.((((...(((....)))....))))...................((.((..(.-------((((.((....)).)))))..)).)).......))))).. ( -27.40)
>DroSec_CAF1 7002 113 + 1
AAGUCAUCAUCGUUGGCCACGUGAAAUAGCGAAAGUUUACCUCACAACUACCACAUACUUUACAGAUGUCAGA-------UAGCGCGUAUGCGGGCUACGAACUUCCUAAUCCUGGCCAA
............(((((((.((((...(((....)))....))))...................((.((..(.-------((((.((....)).)))))..)).)).......))))))) ( -28.10)
>DroSim_CAF1 7106 113 + 1
AAGUCAUCAUCGUUGGCCACGUGAAAUAGCGAAAGUUUACCUCACAACUACCACAUACUUUACAGAUGUCAGA-------UAGCGCGUAUGCGGGCUACGAACUUCCUAAUCCUGGCCAA
............(((((((.((((...(((....)))....))))...................((.((..(.-------((((.((....)).)))))..)).)).......))))))) ( -28.10)
>DroEre_CAF1 7316 120 + 1
AAGUCAUCAUCGUCGGCCACGUGAAAUAGCGAAAGUUUACCUCACAACUACUACAUACUUUGCAGAUGGCAGAUAGCAGAUAGCCCGAAUGCGGGCUACGAACAUCCUAAUUCUGGCCAA
..............(((((.((((...(((....)))....))))...................((((((.....))...(((((((....)))))))....)))).......))))).. ( -34.20)
>DroYak_CAF1 6713 113 + 1
AAGUCAUCAUAGUCGGCCACGUGAAAUAGCGAAAGUUUACCUCACAUCUACGACAUACUUUACAGAUGUCAGA-------UAGCGCGUAUGCGGGCUACCAACUUCCUAAUUCUGGCCAA
..............(((((.((((...(((....)))....))))......(((((.((....))))))).(.-------((((.((....)).)))).).............))))).. ( -30.50)
>consensus
AAGUCAUCAUCGUCGGCCACGUGAAAUAGCGAAAGUUUACCUCACAACUACCACAUACUUUACAGAUGUCAGA_______UAGCGCGUAUGCGGGCUACGAACUUCCUAAUCCUGGCCAA
..............(((((.((((...(((....)))....))))...................(((....((.......((((.((....)).))))......))...))).))))).. (-24.78 = -24.54 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:43 2006