Locus 3717

Sequence ID 2R_DroMel_CAF1
Location 12,321,679 – 12,321,785
Length 106
Max. P 0.684343
window6039

overview

Window 9

Location 12,321,679 – 12,321,785
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 90.73
Mean single sequence MFE -24.73
Consensus MFE -21.80
Energy contribution -21.92
Covariance contribution 0.11
Combinations/Pair 1.09
Mean z-score -1.45
Structure conservation index 0.88
SVM decision value 0.31
SVM RNA-class probability 0.684343
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12321679 106 - 20766785
AUUCGAACCGUUUGAAUCCAAAUUGAGGUUUAAUUUUCUUUGUUAGCCGAAGGAAAUAGAAAC------AGAAAAC-------AAAACCCGUUCUGAUUUUGAGAUCAGCUCGGUU-UCG
.(((((((((((((....)))))...))))).((((((((((.....)))))))))).)))..------.((((..-------.....(((..((((((....))))))..)))))-)). ( -24.61)
>DroSec_CAF1 20436 105 - 1
AUUCGAACCGUUUGAAUCCAAAUUGAGGUUUAAUUUUCUUUGUUAGCCGAAGGAAAUAGAAAC------AGA-AAC-------AAAACCCGUUCUGAUUUUGAGAUCAGAUCGGUU-UCG
.(((((((((((((....)))))...))))).((((((((((.....)))))))))).)))..------.((-((.-------.....(((.(((((((....))))))).)))))-)). ( -26.50)
>DroSim_CAF1 18609 105 - 1
AUUCGAACCGUUUGAAUCCAAAUUGAGGUUUAAUUUUCUUUGUUAGCCGAAGGAAAUAGAAAC------AGA-AAC-------AAAACCCGUUCUGAUUUUGAGAUCAGCUUGGUU-UUU
.(((((((((((((....)))))...))))).((((((((((.....)))))))))).)))..------...-...-------((((((....((((((....))))))...))))-)). ( -23.60)
>DroEre_CAF1 20520 105 - 1
AUUCGAACCGUUUGAAUCCAAAUUGAGGUUUAAUUUUCUUUGUUAGCCGAAGGAAAUAGAAAC------AGA-AAC-------AAAACCCGUUCUGAUUUUGAAAUCAGCGCGGUU-UUU
.(((((((((((((....)))))...))))).((((((((((.....)))))))))).)))..------...-...-------((((.((((.((((((....)))))).)))).)-))) ( -26.00)
>DroYak_CAF1 18882 111 - 1
AUUCGAACCGUUUGAAUCCAAAUUGAGGUUUAAUUUUCUUUGUUGGCCGAAGGAAAUAGAAACAGAAACAGA-AAC-------AAAACCCGUUCUGAUUUUGAGAUCAGCUCGGUU-UUU
.(((((((((((((....)))))...))))).((((((((((.....)))))))))).)))...........-...-------((((.(((..((((((....))))))..))).)-))) ( -25.00)
>DroAna_CAF1 18451 113 - 1
AUUCGAACCGUUUGAAUCCAAAUUGAGGUUUAAUUUUCAUUGUUAGGCGGGGGAAAUAGAAAC------AGA-AACAGAAACAAAAACCCGUUCUGAUUUUGAGAUCAGCUAGAGUCUUC
((((((((((((((....)))))...)))))...(((((..((((((((((............------...-..............)))).))))))..))))).......)))).... ( -22.65)
>consensus
AUUCGAACCGUUUGAAUCCAAAUUGAGGUUUAAUUUUCUUUGUUAGCCGAAGGAAAUAGAAAC______AGA_AAC_______AAAACCCGUUCUGAUUUUGAGAUCAGCUCGGUU_UUU
.(((((((((((((....)))))...))))).((((((((((.....)))))))))).)))...........................(((..((((((....))))))..)))...... (-21.80 = -21.92 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:37 2006