Locus 3710

Sequence ID 2R_DroMel_CAF1
Location 12,306,537 – 12,306,631
Length 94
Max. P 0.807052
window6027

overview

Window 7

Location 12,306,537 – 12,306,631
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 93.14
Mean single sequence MFE -16.46
Consensus MFE -14.40
Energy contribution -14.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 0.87
SVM decision value 0.64
SVM RNA-class probability 0.807052
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12306537 94 + 20766785
CAACAACAGACUAAACCGUCAACGCAGGGAAAUUAGAAUCCCAAAUUUGUAAUGGCCCUGUUAUAAAAGUCCAAUUUUAUUUGAAUUUGAAUGU
........(((......)))...((((((..((((.((........)).))))..))))))........((.(((((.....))))).)).... ( -17.30)
>DroSec_CAF1 5269 87 + 1
-AACAACAGACUAAACCGACAACGCAGGGAAAUUAGAAUCCCAAAUUUGUAAUGGCCCUGUUAUAAAAGUCCAAUUU------AAUUUGAAUGU
-.....((((.((((..(((...((((((..((((.((........)).))))..)))))).......)))...)))------).))))..... ( -17.10)
>DroSim_CAF1 3471 88 + 1
CAACAACAGACUAAACCGACAACGCAGGGAAAUUAGAAUCCCAAAUUUGUAAUGGCCCUGUUAUAAAAGUCCAAUUU------AAUUUGAAUGU
......((((.((((..(((...((((((..((((.((........)).))))..)))))).......)))...)))------).))))..... ( -17.10)
>DroEre_CAF1 3652 88 + 1
CAACAACAGACUAAACCGACAACGCAGGGGAAUUAGAAUCCCAAAUUUGUAAUGGCCCUGUUUUUAAAGUCCAAUUU------UAUUUGAAUGU
......((((..(((..(((((.((((((..((((.((........)).))))..)))))).))....)))...)))------..))))..... ( -15.10)
>DroYak_CAF1 3624 88 + 1
CAACAACAGACUAAACCGACAACGCAGGGAUAUUAGAAUCCCAAAUUUGUAAUGGCCCUGUUUUUAAAGUCCAAUUU------UAUUUGAACGU
......((((..(((..(((((.((((((.(((((.((........)).))))).)))))).))....)))...)))------..))))..... ( -15.70)
>consensus
CAACAACAGACUAAACCGACAACGCAGGGAAAUUAGAAUCCCAAAUUUGUAAUGGCCCUGUUAUAAAAGUCCAAUUU______AAUUUGAAUGU
........((((.....(....)((((((..((((.((........)).))))..))))))......))))....................... (-14.40 = -14.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:26 2006