Locus 371

Sequence ID 2R_DroMel_CAF1
Location 2,356,591 – 2,356,710
Length 119
Max. P 0.622352
window730

overview

Window 0

Location 2,356,591 – 2,356,710
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.13
Mean single sequence MFE -44.35
Consensus MFE -32.72
Energy contribution -36.16
Covariance contribution 3.44
Combinations/Pair 1.03
Mean z-score -1.77
Structure conservation index 0.74
SVM decision value 0.18
SVM RNA-class probability 0.622352
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2356591 119 - 20766785
AAGCGAAGCAGAAAGCCGAGCUGGCUGGGA-AGGGGAAUUAGAUAGAGACGGCAUAAUUAGAGCACGGCCACCACUCGGCGUUGCAAGCCUAAUGAGUUCGGCUCGGCUUUUGGCGCUAC
.((((.....((((((((((((((((.(..-(((..(((((.............)))))...(((..(((.......)))..)))...)))..).)).))))))))))))))..)))).. ( -42.12)
>DroSec_CAF1 6116 120 - 1
CAGCGAAGCAGAAAGCCGAGCUGGCUGGGAAAGGGGAAUUAGAUGGAGACGGCAUAAUUAGAGCACGGCCAGCACUCGGCGUUGCAAGCCUAAUGAGUUCGGCUCAGCUUUUGGCGCUGC
((((...((((...(((((((((((((.........(((((..((....))...)))))......))))))))..))))).))))..(((...((((.....))))......))))))). ( -48.16)
>DroSim_CAF1 6221 120 - 1
CAGCGAAGCAGAAAGCCGAGCUGGCUGGGAAAGGGGAAUUAGAUGGAGACGGCAUAAUUAGAGCACGGCCAGCACUCGGCGUUGCAAGCCUAAUGAGUUCGGCUCGGCUUUUGGCGCUGC
(((((.....((((((((((((((((((........(((((..((....))...))))).........)))))(((((((.......)))....)))).)))))))))))))..))))). ( -50.03)
>DroEre_CAF1 6500 106 - 1
CA---AA---------G-AGCUGGCUGGGC-GGGGGAAUUAGGUGGAGACGGCAUAAUUAGAGCACGGCCAACUCUCGGCGUUGCAAGCCUAAUGAGUUCGGCUCGGCUUUUGGCGCUGC
..---.(---------(-((.((((((.((-.....((((((.((....)).).)))))...)).)))))).))))((((((((.(((((....(((.....)))))))).)))))))). ( -41.60)
>DroYak_CAF1 5894 118 - 1
CAGCAAAGCACAAAACC-AGCUGGCUGGGA-AGGGGAAUUAGGUGGCGACGGCAUAAUUAGAGCACGGCCAGCACUCGGCGUUGCAAGCCUAAUGAGUUCGGCUCGGCUUUUGGCGCUGC
((((...((.((((...-(((((((((((.-......(((((((.((((((((..............))).((.....)))))))..)))))))...)))))).))))))))))))))). ( -39.84)
>consensus
CAGCGAAGCAGAAAGCCGAGCUGGCUGGGA_AGGGGAAUUAGAUGGAGACGGCAUAAUUAGAGCACGGCCAGCACUCGGCGUUGCAAGCCUAAUGAGUUCGGCUCGGCUUUUGGCGCUGC
(((((.....((((((((((((((((.(...(((..(((((..((....))...)))))...(((..(((.......)))..)))...)))..).)).))))))))))))))..))))). (-32.72 = -36.16 +   3.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:42 2006