Locus 3702

Sequence ID 2R_DroMel_CAF1
Location 12,281,730 – 12,281,850
Length 120
Max. P 0.530776
window6015

overview

Window 5

Location 12,281,730 – 12,281,850
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 80.08
Mean single sequence MFE -35.33
Consensus MFE -21.07
Energy contribution -22.72
Covariance contribution 1.65
Combinations/Pair 1.27
Mean z-score -1.73
Structure conservation index 0.60
SVM decision value -0.01
SVM RNA-class probability 0.530776
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12281730 120 - 20766785
GGAAAGUUGUUGGCCGCAAAACAGCUAACCGUUUUCCAAAAAUUGUCGAAUUCCGCAUCCAACGCGUUUUUCACGGUAAAAACAUCGGAUUUGGUUGUUUUUGUGUCGAUGGCCGGCAUU
((((((..((((((.(.....).))))))..))))))((((((..((((((((.((.......))((((((......))))))...))))))))..))))))((((((.....)))))). ( -32.50)
>DroSec_CAF1 145429 120 - 1
GGAAAGUUGUUGGCCGCAAAACAGCUAACCGUUUUCCAAAAAUUGUCAAAUUCCGCGUCCAUCGCGUUUGGCACGAAAAAAACAUCGGAUUUGGUUGUUUUUGUGUCGGUGGACGACAUU
.....((((((.(((((((((((((((((((............(((((((...((((.....)))))))))))............)))..))))))))))...)).)))).))))))... ( -38.95)
>DroSim_CAF1 139176 120 - 1
GGAAAGCUGUUGGCCGCGAAACAGCUAACCGUUUUCCAAAAAUUGUCAAAUUCCGCGUCCAUCGCGUUUGGCACAAAAAAAACAUCGGAUUUGGUGGUUUUUGUGUCGGUGGCUGACAUU
(((((((.((((((.(.....).)))))).)))))))......(((((....(((((.....)))....((((((((((...(((((....))))).))))))))))))....))))).. ( -43.10)
>DroEre_CAF1 151727 108 - 1
GGAAAGCUGUUGGCCGCAAAACAGCUAACCGUUUUCCAAAAGUUUUCGAAUUCCGCGUCCAGGGCGUUGGUCACCAAAGGAGCAUCAGAUUUGCUGUUUAUA------------GACAUU
(((((((.((((((.(.....).)))))).)))))))....((((..(((((((((((.....))))(((...)))..)))(((.......))).))))..)------------)))... ( -28.70)
>DroYak_CAF1 147383 120 - 1
GGAAAAUUGUUGGCCGCAAAACAGCUAACCGUUUUCCAAAAGUUUUCGAAUUCCGCGUCCAUGGCGUUUGGUGGAAAAACAUCAUCGGGCUUCUUGUUUAUUAUGCAGGGUGUCACCAUU
(((((((.((((((.(.....).)))))).))))))).........(((.....((((.....)))).(((((......))))))))(((.((((((.......)))))).)))...... ( -33.40)
>consensus
GGAAAGUUGUUGGCCGCAAAACAGCUAACCGUUUUCCAAAAAUUGUCGAAUUCCGCGUCCAUCGCGUUUGGCACAAAAAAAACAUCGGAUUUGGUGGUUUUUGUGUCGGUGGCCGACAUU
(((((((.((((((.(.....).)))))).)))))))((((((..(((((((((((.......)))(((.....))).........))))))))..))))))((((((.....)))))). (-21.07 = -22.72 +   1.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:14 2006