Locus 3701

Sequence ID 2R_DroMel_CAF1
Location 12,281,111 – 12,281,203
Length 92
Max. P 0.808870
window6014

overview

Window 4

Location 12,281,111 – 12,281,203
Length 92
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 80.56
Mean single sequence MFE -29.05
Consensus MFE -19.55
Energy contribution -19.47
Covariance contribution -0.08
Combinations/Pair 1.24
Mean z-score -1.87
Structure conservation index 0.67
SVM decision value 0.64
SVM RNA-class probability 0.808870
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12281111 92 + 20766785
GGCCACUGUGGCAGAC---------CCCCAAUUUUCC--CCGAUGUUUGAUCUUAUUAUGAGCCAUUUCACAUAUCGCUGCCGGCACAGUGGCUAUAGCGACG
((((((((((((((..---------............--.((((((.(((.(((.....))).....))).)))))))))))...)))))))))......... ( -26.96)
>DroSec_CAF1 144836 94 + 1
AGCCACUGUGGCGGCC---------CCCCAAUUUUCCCCCCGAUGUUUGAUCUUAUUAUGAGCCAUUUCAGAUAUCGCUGCCGGCACAGUGGCUAUAGCGACG
((((((((((.((((.---------...............((((((((((.(((.....))).....))))))))))..)))).))))))))))......... ( -35.87)
>DroSim_CAF1 138575 97 + 1
AGCCACUGUGGCGCCCGC-----UUCCCCAAUUUUCC-CCCGAUGUUUGAUCUUAUUAUGAGCCAUUUCAGAUAUCGCUGCCGGCACAGUGGCUAUAGCGACG
((((((((((.((...((-----..............-..((((((((((.(((.....))).....))))))))))..)))).))))))))))......... ( -30.07)
>DroEre_CAF1 151175 89 + 1
AGCCACUGUGGCGG---------CCCCCC-AUUUUA---CCAAUGUCUGAUCUUAUUAUGAGCCAUUUGAC-UAUCGCUGCCGGCACAGUGGCUAUAGCGACG
((((((((((.(((---------(....(-(((...---..))))...............(((.((.....-.)).))))))).))))))))))......... ( -30.20)
>DroYak_CAF1 146762 93 + 1
AGCCACUGUGGCGCCUGC-----CCCCCC-AUUUUC---CCAAUGUUUGAUCUUAUUAUGAGCCAUUUCAC-UAUCGCUGCCGGCACAGUGGCUAUAGCGACG
((((((((((.((.(.((-----.....(-(((...---..)))).............((((....)))).-....)).).)).))))))))))......... ( -24.90)
>DroAna_CAF1 137962 91 + 1
-GUUGCUGUUGCCACCCCAGAGGAGCCCCCGCCUUCC--UGGAUGUUUGAUCUUAUUAUGAGCUAUUUCAC-UAUCGCUGCCGGCACAGUGGCUC--------
-((..((((.(((...(((((((.((....))))).)--)))..................(((.((.....-.)).)))...)))))))..))..-------- ( -26.30)
>consensus
AGCCACUGUGGCGGCC_________CCCCAAUUUUCC__CCGAUGUUUGAUCUUAUUAUGAGCCAUUUCAC_UAUCGCUGCCGGCACAGUGGCUAUAGCGACG
((((((((((.((............................((((........))))...(((.((.......)).)))..)).))))))))))......... (-19.55 = -19.47 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:13 2006