Locus 3700

Sequence ID 2R_DroMel_CAF1
Location 12,277,816 – 12,277,907
Length 91
Max. P 0.869841
window6013

overview

Window 3

Location 12,277,816 – 12,277,907
Length 91
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 71.41
Mean single sequence MFE -12.32
Consensus MFE -9.11
Energy contribution -9.08
Covariance contribution -0.03
Combinations/Pair 1.20
Mean z-score -1.00
Structure conservation index 0.74
SVM decision value 0.87
SVM RNA-class probability 0.869841
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12277816 91 - 20766785
UUUAUUUCGAGUCCAAG------AAAAAAUUUUACUUA-AAUUUAUAUUCGCAUCACAGCACCACGAUGCCGAUUUCUCCACACAAUCGAUGGUGUAC
....((((........)------)))((((((.....)-)))))..............((((((((((.................)))).)))))).. ( -13.13)
>DroGri_CAF1 174842 91 - 1
GAACCC-CAAA--C--AAAAGAUAAAAACUCAAUAAUAAACUCUAAU--CCAUUGACAGCCCCGCGAUUCGGACUUCUCCACACAAUCGAUGGUCUAC
......-....--.--...............................--(((((((..((...)).....(((....)))......)))))))..... (  -9.90)
>DroSec_CAF1 141587 91 - 1
UUUAUUUCAAAUCCAAU------AAAAAACUAUACUUA-AAUUCAUUUUCGUAUCGCAGCACCACGAUGCCGAUUUCUCCACACAAUCGAUGGUGUAC
.................------...............-...................((((((((((.................)))).)))))).. ( -11.33)
>DroSim_CAF1 135295 91 - 1
UAAAUUUAAAAUUCAUG------AAAAAUAUAUACUUA-AAUUCAUUUUCGUAUUGCAGCACCACGAUGCCGAUUUCUCCACACAAUCGAUGGUGUAC
..............(((------((((...........-......)))))))......((((((((((.................)))).)))))).. ( -12.96)
>DroEre_CAF1 147886 90 - 1
UGCACUUAAAUUCCACG------AAAU-CUGUUACCCA-AAUUCGUAUUUGUCUCACAGCAUCACGAUGCCGAUUUCUCCACACAAUCGAUGGUGUAC
(((((...........(------((((-((((.(..((-(((....)))))..).)))((((....)))).))))))......((.....))))))). ( -14.90)
>DroYak_CAF1 143443 90 - 1
CUCAUUAAAAUUUCAUA------AUAA-AUUAUUCCCU-AAUUCAUAUUGGUAUCAUAGCAUCACGAUGCCGAUUUCUCCACACAAUCGAUGGUGUAC
.................------....-..........-.......(((((((((..........)))))))))......((((........)))).. ( -11.70)
>consensus
UUAAUUUAAAAUCCAAG______AAAAAAUUAUACUUA_AAUUCAUAUUCGUAUCACAGCACCACGAUGCCGAUUUCUCCACACAAUCGAUGGUGUAC
..........................................................((((((((((.................)))).)))))).. ( -9.11 =  -9.08 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:12 2006