| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,274,966 – 12,275,086 |
| Length | 120 |
| Max. P | 0.629050 |
| Location | 12,274,966 – 12,275,086 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.11 |
| Mean single sequence MFE | -40.25 |
| Consensus MFE | -23.15 |
| Energy contribution | -22.77 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12274966 120 + 20766785 UCUUUCCGAGGAUCACGCGAGAACCGGUCUUAAGAACCUCCGGUUCAACCAACUUGCGUCCAUUUACAUAGAUGAUAGCAUCCUUGUGUGGCAGCAGGGUAACCGUGCUGUUCUUGUUCU ......(((((((..((((.(((((((............)))))))......(((((..((((..(((..((((....))))..)))))))..))))).....))))..))))))).... ( -39.20) >DroVir_CAF1 167012 120 + 1 UCUUGCCCAGAAUCACGCGAGAGCCUGUCUUCAGCACCUCGGGUUCGACAAGCUUGCGGCCAUUGAUAAAGAUGAUGGCAUCCUUGUGGGGCAAGAGGGUGACAGUGCUGUUGCGAUUCU ........((((((..((((.((((((((....((.((((..((((.(((((..(((.(.((((......)))).).)))..))))).))))..))))))))))).))).)))))))))) ( -49.90) >DroGri_CAF1 171528 120 + 1 UCUUGCCGAGUAUAACACGUGAGCCCGUCUUCAGCACCUCGGGCUCAACGAGUUUGCGUCCAUUGAUGAAAAUGAUGGCAUCCUUGUGCGGCAAAAGAGUGACAGUGCUGUUGCGAUUCU ..((((((...........((((((((............))))))))(((((..(((...((((......))))...)))..))))).))))))....(..(((....)))..)...... ( -40.50) >DroWil_CAF1 216552 120 + 1 UCUUACCCAGAAUCACACGUGAGCCGGUCUUUAAAACUUCAGGUUCGACCAAUUUGCGUCCAUUAACGUAAAUAAUGGCAUCCUUGUGGGGUAAAAGUGUAACCAUACUGUUACGAUUCU ........((((((.((((.(((((((((.....(((.....))).)))).((((((((......))))))))...))).))..))))..((((.(((((....))))).)))))))))) ( -32.60) >DroMoj_CAF1 178360 120 + 1 UCUUGCCCAGAAUCACGCGCGAGCCUGUCUUCAAGACCUCGGGCUCAACAAGCUUUCGGCCAUUAAUGAAUAUGAUGGCAUCCUUGUGGGGCAACAGGGUCACGGUGCUGUUGCGAUUCU ........((((((.(.((((((((((((.....)))...))))))............(((((((.......)))))))......))).)(((((((.(......).))))))))))))) ( -41.70) >DroAna_CAF1 131378 120 + 1 UCUUGCCCAAAAUCACUCGUGAUCCGGUCUUGAGGACCUCCGGUUCUACCAAUUUACGGCCAUUCACAUAGAUGAUGGCGUCCUUGUGCGGCAACAGGGUAACCGUGCUGUUGCGGUUCU ...(((((.........(((((...(((....((((((...)))))))))...)))))(((...((((..((((....))))..)))).)))....)))))(((((......)))))... ( -37.60) >consensus UCUUGCCCAGAAUCACGCGUGAGCCGGUCUUCAGAACCUCGGGUUCAACCAACUUGCGGCCAUUAACAAAGAUGAUGGCAUCCUUGUGGGGCAACAGGGUAACCGUGCUGUUGCGAUUCU ..((((((.....(((....(((((((............)))))))...........(.((((((.......)))))))......)))))))))....(((((......)))))...... (-23.15 = -22.77 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:08 2006