| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,263,463 – 12,263,559 |
| Length | 96 |
| Max. P | 0.847934 |
| Location | 12,263,463 – 12,263,559 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 72.36 |
| Mean single sequence MFE | -29.92 |
| Consensus MFE | -13.02 |
| Energy contribution | -12.13 |
| Covariance contribution | -0.89 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.847934 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12263463 96 - 20766785 UUC------------GGUAUAACAAUUGAAAGGCGGUACAUUGGGUAUCAGUGAUGCUCGACAGCAUUACUAAAGCGAUUAUCCUGAGGCCUAUAUAUAUAGGGCAAU .((------------((.(((((...(....)(((((((.....)))))(((((((((....)))))))))...))).)))).))))(.(((((....))))).)... ( -25.70) >DroPse_CAF1 132300 105 - 1 AUGGCUAAGCCUGCAGAUUUGC-GAUCCCAGAGCCUGAAAUUGAUCAUUUGUGAUGGCCGCGAGCAUGGCUGAUGGGAUUAUCCUGUGGCCUAUA--AAUAGGGCACA ..(((...))).((......))-(((((((.((((((....((..((((...))))..))....)).))))..))))))).....(((.((((..--..)))).))). ( -33.50) >DroSec_CAF1 127231 96 - 1 UUG------------GGUAUAACAGUUUAAAGGCGGUACAUUGGCUAUCAGUGAUGCUCGACAGCAUUACUAAAGCGAUUAUCCUGAGGCCUAUAUAUAUAGGGCAAU (..------------((.((((..((((...(((.(.....).)))...(((((((((....))))))))).))))..))))))..)(.(((((....))))).)... ( -27.60) >DroSim_CAF1 120981 96 - 1 UUG------------GGUAUAACAGUUUAAAGGCGGUACAUUGGGUAUCAGUGAUGCUCGACAGCAUUACUAAAGCGAUUAUCCUGAGGCCUAUAUAUAUAGGGCAAU (..------------((.((((..((((......(((((.....)))))(((((((((....))))))))).))))..))))))..)(.(((((....))))).)... ( -29.30) >DroYak_CAF1 128941 94 - 1 UUG------------GGCAUAUCAGCUUAAAGGCGGCACAUUGGGUAUCAGUGAUGCUCGACAGCAUUACUAAAGCGAUUAUCCUGAGGCCUAUA--UAUAGGGCAAG .((------------(((...((((..(((..(((..((.....))..)(((((((((....)))))))))...))..)))..)))).)))))..--........... ( -26.70) >DroPer_CAF1 131491 105 - 1 AUGGCUAAGCCUGCAGAAAUGC-GAUCCCAGAGCCUGAAAUUGAUCAUUUGUGAUGGCCGCGAGCAUGGCUGAUGGGAUUAUCCUGUGGCCUAUA--AAUAGGGCACA ..(((...))).(((....)))-(((((((.((((((....((..((((...))))..))....)).))))..))))))).....(((.((((..--..)))).))). ( -36.70) >consensus UUG____________GGUAUAACAAUUUAAAGGCGGUACAUUGGGUAUCAGUGAUGCUCGACAGCAUUACUAAAGCGAUUAUCCUGAGGCCUAUA__UAUAGGGCAAU ................................((.((....((((((((...)))))))))).))......................(.(((((....))))).)... (-13.02 = -12.13 + -0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:05 2006