Locus 3690

Sequence ID 2R_DroMel_CAF1
Location 12,243,915 – 12,244,021
Length 106
Max. P 0.668954
window5998

overview

Window 8

Location 12,243,915 – 12,244,021
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 76.94
Mean single sequence MFE -18.01
Consensus MFE -2.88
Energy contribution -4.80
Covariance contribution 1.92
Combinations/Pair 1.12
Mean z-score -1.66
Structure conservation index 0.16
SVM decision value 0.29
SVM RNA-class probability 0.668954
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12243915 106 - 20766785
AAACUUUUUCAGACUACCAUAAAUGGCAGUGCGUAUUUUUUUCUGCAUCAUUUGGAAGUUCGUUUCAUUUUUAUUUCCCAGUAAUCAUUUCCUAAAUGUAGCCAUU
.....................((((((.(((((.(......).)))))(((((((((((..(((..................))).)))))).)))))..)))))) ( -15.27)
>DroSec_CAF1 108212 85 - 1
UAACUUUAUCAG-----------------UGUG---GUUUUUCUGCUUAAUUUGGAAUUUCGUUACAUUUUUAUUUC-CAGUAAUCAUUUCCUAAAUGUAGCCAUU
............-----------------.(((---(.....((((.......((((....(((((...........-..)))))...)))).....)))))))). (  -9.62)
>DroSim_CAF1 101754 85 - 1
UAACUUUUUCAG-----------------UGUG---UUUUUUCUGCUUAAUUUGAAAGUUCGUUACAUUUUUAUUUC-CAGUAAUCAUUUACUAAAUGUAGCCAUU
.(((((((....-----------------((.(---(.......)).))....))))))).(((((((((.......-.(((((....)))))))))))))).... ( -12.50)
>DroEre_CAF1 112868 102 - 1
AAACUUUUUGUGGCUACAAUGAAUGGCAGUGCG---UCUUUACUGCAUAAUUUGGAAGUUCAUCACAUUUUUAUUCC-CAGUAAUAAGUUCCUAAAUGUAGCCAUU
.........(((((((((..((((.((((((..---....))))))...))))((((.((.((.((...........-..)).)))).))))....))))))))). ( -24.72)
>DroYak_CAF1 108030 102 - 1
AAACUUUUUGUGGCUGCAAUAAAUGGCAGUGUG---UUUUUACUGCACAAUUUGGAAGUUCGUCACAUUUUUAUUUC-CAGCAAUCAUAUUCCAAAUGUAGCCAUU
.........(((((((((.....((((((((..---....)))))).))..((((((((.............)))))-)))...............))))))))). ( -27.92)
>consensus
AAACUUUUUCAG_CU_C_AU_AAUGGCAGUGUG___UUUUUUCUGCAUAAUUUGGAAGUUCGUUACAUUUUUAUUUC_CAGUAAUCAUUUCCUAAAUGUAGCCAUU
..........................................((((((.....((((((..(((((..............))))).))))))...))))))..... ( -2.88 =  -4.80 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:58 2006