Locus 369

Sequence ID 2R_DroMel_CAF1
Location 2,355,265 – 2,355,379
Length 114
Max. P 0.991511
window728

overview

Window 8

Location 2,355,265 – 2,355,379
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.21
Mean single sequence MFE -36.72
Consensus MFE -31.96
Energy contribution -31.56
Covariance contribution -0.40
Combinations/Pair 1.12
Mean z-score -1.98
Structure conservation index 0.87
SVM decision value 2.27
SVM RNA-class probability 0.991511
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2355265 114 - 20766785
UGAACCCUUUCAUAAAGGACAGACCGAGCAGCAAAGGGCUUAAUGUGUGUAUUCGCUAAAAGCCUGUUAC------UGUUACUACUGCUGUUCAUGGCAACCAUGAGCUCCAUGGAUUGG
....((..(((((...((((((....(((((.((.((((((...(((......)))...)))))).)).)------))))....)))..((((((((...))))))))))))))))..)) ( -34.30)
>DroSec_CAF1 4867 114 - 1
UGUACCCUUUCAUAAAGGACAGACCGAGCAGCAAAGGGCUUAAUGUGUGUAUUCGCUAAAAGCCUGUUAC------UGUUGCUACUGCUGUUCAUGGCAACCAUGUGCUCCAUGGAUUGG
....((..(((((...((((((....(((((((..((((((...(((......)))...)))))).....------)))))))....))))))..((((......))))..)))))..)) ( -35.90)
>DroSim_CAF1 4930 114 - 1
UGAACCCUUUCAUAAAGGACAGACCGAGCAGCAAAGGGCUUAAUGUGUGUAUUCGCUAAAAGCCUGUUAC------UGUUGCUACUGCUGUUCAUGGCAACCAUGAGCUCCAUGGAUUGG
....((..(((((...((((((....(((((((..((((((...(((......)))...)))))).....------))))))).)))..((((((((...))))))))))))))))..)) ( -36.70)
>DroEre_CAF1 4742 114 - 1
CGAACCCUUUCAUAAAGGACAGACCGAGCGGCAAAGGGCUUAAUGUGUGUAUUCACUAAAAGCCUGUUAC------UGUUGCUGCUGCUGUUCAUGGCAACCAUGAGCUCGAUGGGUUGG
(.(((((..((.....((.....)).((((((((.((((((...(((......)))...)))))).....------..))))))))...((((((((...))))))))..)).))))).) ( -40.10)
>DroYak_CAF1 4700 119 - 1
UGAACCCUUUCAUAAAGGACAGACCGAGCAGCAAAGGGC-UAAUGUGUGUAUUCACUAAAAGCCUGUUACUGUUACUGUUGCUACUGCUGUUCAUGGCAACCAUUCGCCCCAUGGGUUGG
..(((((.........((((((....(((((((..((((-(...(((......)))....)))))((.......)))))))))....))))))..(((........)))....))))).. ( -36.60)
>consensus
UGAACCCUUUCAUAAAGGACAGACCGAGCAGCAAAGGGCUUAAUGUGUGUAUUCGCUAAAAGCCUGUUAC______UGUUGCUACUGCUGUUCAUGGCAACCAUGAGCUCCAUGGAUUGG
....((..(((((...((((((....(((((((..((((((...(((......)))...))))))...........)))))))....))))))..(((........)))..)))))..)) (-31.96 = -31.56 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:40 2006