Locus 3689

Sequence ID 2R_DroMel_CAF1
Location 12,243,459 – 12,243,549
Length 90
Max. P 0.690088
window5997

overview

Window 7

Location 12,243,459 – 12,243,549
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 83.32
Mean single sequence MFE -19.50
Consensus MFE -13.80
Energy contribution -13.97
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.16
Structure conservation index 0.71
SVM decision value 0.33
SVM RNA-class probability 0.690088
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12243459 90 + 20766785
UUUAUCGAAAUUAGCAUAAAUGGCAAGCGCUUCAACUUUUGCCGCCUGAUCGCCACCACAGGUGGCCGCCUAUAUCUUUAGUC-CUACCUU
......((.((..((......((((((.(......).))))))........((((((...)))))).))..)).)).......-....... ( -19.30)
>DroSec_CAF1 107782 90 + 1
UUCAUCGAAAUUAACAUAAAUGGCAAGAGCUUCAACUUUUGCCGCCUGAUCACCACCACAGGUGGCCGCCUAUAUCUUUGGUC-AUACCUU
.....................((((((((......)))))((((((((..........)))))))).))).........((..-...)).. ( -20.70)
>DroSim_CAF1 101299 90 + 1
UUCAUCGAAAUUAACAUAAAUGGCAAGCGCUUCAACUUUUGCCGCCUGAUCAACACCACAGGUGGCCGCCUAUAUCUUUGGUC-AUACCUU
.....................((((((........)))..((((((((..........)))))))).))).........((..-...)).. ( -18.00)
>DroEre_CAF1 112415 84 + 1
UUCAUCGAAAUUAACAUAAAUGGCAACAGCUUCAACUUCUGCCGCCUGA------CCACAGGUGGCCUGCCAUAUCUUUGACC-CUACCUU
...................((((((..((......))...((((((((.------...)))))))).))))))..........-....... ( -20.40)
>DroYak_CAF1 107562 84 + 1
UUCAUCGAAAUUAACAUAAAUGGCAACAGCUUCAACUUCUGCCGCCUGA------CCACAGGUGGCCUCCUAUAUCUUUACCC-CUACCUU
....................((....))............((((((((.------...)))))))).................-....... ( -16.40)
>DroAna_CAF1 95368 85 + 1
UUUAUUGAAAUUAACAUAAAUGGCAACUGCUUUAACUUUUACCGCCUGA------CCACAGGUGGCCUGUUGGCCUCUUGGCCAGAACCCU
.....................(((....)))..........(((((((.------...)))))))....((((((....))))))...... ( -22.20)
>consensus
UUCAUCGAAAUUAACAUAAAUGGCAACAGCUUCAACUUUUGCCGCCUGA______CCACAGGUGGCCGCCUAUAUCUUUGGCC_CUACCUU
.....................(((....))).........((((((((..........))))))))......................... (-13.80 = -13.97 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:57 2006