Locus 3686

Sequence ID 2R_DroMel_CAF1
Location 12,239,644 – 12,239,752
Length 108
Max. P 0.954554
window5994

overview

Window 4

Location 12,239,644 – 12,239,752
Length 108
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 80.44
Mean single sequence MFE -30.48
Consensus MFE -17.26
Energy contribution -17.26
Covariance contribution -0.00
Combinations/Pair 1.20
Mean z-score -2.52
Structure conservation index 0.57
SVM decision value 1.44
SVM RNA-class probability 0.954554
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12239644 108 - 20766785
GGGCUAAGUGGGCAGAUC-CCAGACAUGGUCUUAGGCCAUGUAAAUGGGGGUUUUCAACAACC--CACCAUCCACCAUCUACCAUCCAACAGCCACUAGUCACCAUCUA------CC
.(((((.((((.(.....-(((.(((((((.....)))))))...)))(((((......))))--).........................))))))))))........------.. ( -32.50)
>DroSec_CAF1 100592 94 - 1
GGGCUAAGUGGGCAGAUC-CCAGACAUGGUCUUAGGCCAUGUAAAUGGGGGUUCUCAACAACC--CACCAUCGACCAUC--------------CACCAGUCACCAUCUA------CC
.((((..(((((......-(((.(((((((.....)))))))...)))(((((......))))--)...........))--------------))).))))........------.. ( -30.10)
>DroSim_CAF1 97586 91 - 1
GGGCUA-GUGGGCAGAUC-CCAGACAUGGUCUUAGG-CAUGUA-AUGGGGGUUCUCAACAACC--CACCAUCUACCAUC--------------CACCAGUCACCAUCUA------CC
.((((.-((((((.((..-(((....)))..))..)-)..(((-(((((((((......))))--).)))).)))...)--------------))).))))........------.. ( -27.20)
>DroEre_CAF1 108556 101 - 1
GGGCUAAGUGGGCAGAUC-CCAGACAUGGUCUUAGGCCAUGUAAAUGGGGGUUCUCAACAACC--CACCAUCCACCAUC-------CAGCAGGCACCAGUCACCAUCUA------CC
(((((..((((...(((.-(((.(((((((.....)))))))...)))(((((......))))--)...)))..)))).-------.))).(((....))).)).....------.. ( -33.90)
>DroAna_CAF1 92372 102 - 1
A-GCUAAGUGGGCAGAUCCCCAGACAUGGACUUAGGCCAUGUAAAUGGGGGUUCUCAACAGGCACAACUACAUCCUAUA--------------CACUAUACAGUAUCCACCCCUCCC
.-(((...((((..((((((((.((((((.(....)))))))...))))))))))))...))).............(((--------------(........))))........... ( -28.70)
>consensus
GGGCUAAGUGGGCAGAUC_CCAGACAUGGUCUUAGGCCAUGUAAAUGGGGGUUCUCAACAACC__CACCAUCCACCAUC______________CACCAGUCACCAUCUA______CC
((.....((((........(((.(((((((.....)))))))...))).((((......))))....))))...))......................................... (-17.26 = -17.26 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:54 2006