| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,234,962 – 12,235,054 |
| Length | 92 |
| Max. P | 0.934076 |
| Location | 12,234,962 – 12,235,054 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 94.51 |
| Mean single sequence MFE | -18.50 |
| Consensus MFE | -16.74 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.934076 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12234962 92 - 20766785 ACGUAUGUAAAUACGUUAAAUGUAAACAUUUUUGGCAACGAAUGGUCAAAUAUUUGUUAACAAAGUAUA------UGUGUGUAUAAUGAAUGGAAAAU ((((((....))))))....((((.(((((((((..((((((((......))))))))..)))))...)------)))...))))............. ( -16.90) >DroSec_CAF1 96026 97 - 1 -CGUAUGUAAAUACGUAAAAUGUAAACAUUUUUGGCAACGAAUGGUCAAAUAUUUGUUAACAAAGUGUACAUAUGUGUGUGUAUAAUGAAUGGAAAAU -(((((....)))))...........((((((((..((((((((......))))))))..)))..((((((((....))))))))..)))))...... ( -19.40) >DroSim_CAF1 92968 97 - 1 -CGUAUGUAAAUACGUAAAAUGUAAACAUUUUUGGCAACGAAUGGUCAAAUAUUUGUUAACAAAGUAUACAUAUGUGUGUGUAUAAUGAAUGGAAAAU -(((((....)))))...........((((((((..((((((((......))))))))..))).((((((((....))))))))...)))))...... ( -19.70) >DroYak_CAF1 99108 95 - 1 -CGUAUAUAAAUACGUAAAAUGUAAACAUUUUUGGCAACGAAUGGUCAAAUAUUUGUUAACAAAGUAUACAUA--UGUGUGUAUAAUGAAUGGAAAAU -(((.((((.(((((((...((((.((...((((..((((((((......))))))))..)))))).))))))--))))).))))))).......... ( -18.00) >consensus _CGUAUGUAAAUACGUAAAAUGUAAACAUUUUUGGCAACGAAUGGUCAAAUAUUUGUUAACAAAGUAUACAUA__UGUGUGUAUAAUGAAUGGAAAAU .(((((....)))))...........((((((((..((((((((......))))))))..))).((((((((....))))))))...)))))...... (-16.74 = -17.30 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:49 2006