| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,232,753 – 12,232,851 |
| Length | 98 |
| Max. P | 0.968712 |
| Location | 12,232,753 – 12,232,851 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 77.41 |
| Mean single sequence MFE | -20.75 |
| Consensus MFE | -13.11 |
| Energy contribution | -13.00 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.968712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12232753 98 + 20766785 CCUCAUAAAAAUCCGAAUUAUUUGCGGAACUACCAUGG-AGACAUGGA-CAGGAAUGCCCUUUACCCCAUUCCAGCCAAAGUUCCC----CACUUCUC-CGACAG ......................((.((((((.(((((.-...))))).-..((((((..........))))))......)))))).----))......-...... ( -24.50) >DroVir_CAF1 117990 79 + 1 C--AACAAAAAUGCGAAUUAUUUACGCAAGUACAACGUGAGGUCUGCAGUACGAAUGCCAAU----AUAUUCCAGC------------------UCUCAUGA--G .--........((((((....)).)))).......((((((..(((......(((((.....----.)))))))).------------------.)))))).--. ( -14.90) >DroSec_CAF1 93786 99 + 1 CCUCAUAAAAAUCCGAAUUAUUUGCGGAACUACCAUGG-AGACAUGGA-CAGGAAUGCCCUUUACCCCAUUCCAGCCAAUUUCCCC----CACUUCUCCCCACUG ...........((((((....)).))))....(((((.-...))))).-..((((((..........)))))).............----............... ( -19.60) >DroSim_CAF1 90692 99 + 1 CCUCAUAAAAAUCCGAAUUAUUUGCGGAACUACCAUGG-AGACAUGGA-CAGGAAUGCCCUUUACCCCAUUCCAGCCAAUGUCCCC----CACUUCGCCCCACUG .......................(((((....(((((.-...))))).-..((((((..........)))))).............----...)))))....... ( -21.10) >DroEre_CAF1 101617 99 + 1 CCUCAUAAAAAUCCGAGUUAUUUGCGGAACUACCAUGG-AGACAUGGA-CAGGAAUGCCCCUUACCCCAUUCCAUCCAAAGUCCCCC--CCACUUG--GCGACUU .(((..........)))........(((....(((((.-...))))).-..((((((..........)))))).))).(((((((..--......)--).))))) ( -25.40) >DroYak_CAF1 96888 103 + 1 CCUCAUAAAAAUCCGAGUUAUUUGCGGAACUACCAUGG-CGACAUGGC-CAGGAAUGCCCUUUACCCCAUUCCAUCCAAAGUCCCCCCACCACUUCCCCCGACUU .(((..........)))........(((....(((((.-...))))).-..((((((..........)))))).))).(((((.................))))) ( -19.03) >consensus CCUCAUAAAAAUCCGAAUUAUUUGCGGAACUACCAUGG_AGACAUGGA_CAGGAAUGCCCUUUACCCCAUUCCAGCCAAAGUCCCC____CACUUCUCCCGACUG ...........((((((....)).))))....(((((.....)))))....((((((..........))))))................................ (-13.11 = -13.00 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:46 2006