Locus 368

Sequence ID 2R_DroMel_CAF1
Location 2,355,067 – 2,355,185
Length 118
Max. P 0.998553
window727

overview

Window 7

Location 2,355,067 – 2,355,185
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.15
Mean single sequence MFE -28.62
Consensus MFE -25.44
Energy contribution -25.80
Covariance contribution 0.36
Combinations/Pair 1.03
Mean z-score -2.40
Structure conservation index 0.89
SVM decision value 3.14
SVM RNA-class probability 0.998553
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2355067 118 - 20766785
CACUGAAUUAAAAGUUUUACGGGCUCAAACUUUUGCCAACAAACUUGUGGCAGUCGCAUAAAAUGCCUCGACUACCCC--UGAGCCUAAAAGCAUGCACACACGCGGCAACAAAGCCAAC
.............(((((..(((((((.......((((.((....))))))((((((((...))))...)))).....--))))))).)))))..((......))(((......)))... ( -30.40)
>DroSec_CAF1 4676 120 - 1
CACUGAAUUAAAAGUUUUACGGGCUCAAACUUUCGCCAACAAACUUGUGGCAGUCGCAUAAAAUGGCUCGACUACCCCUCUGAGCCUAAAAGCAAGCACACACGCGGCAACAAAGCCAAC
.............(((((..(((((((.......((((.((....))))))((((((........))..)))).......))))))).)))))..((......))(((......)))... ( -30.10)
>DroSim_CAF1 4739 120 - 1
CACUGAAUUAAAAGUUUUACGGGCUCAAACUUUCGCCAACAAACUUGUGGCAGUCGCAUAAAAUGCCUCGACUACCCCUCUGAGCCUAAAAGCAUGCACACACGCGGCAACAAAGCCAAC
.............(((((..(((((((.......((((.((....))))))((((((((...))))...)))).......))))))).)))))..((......))(((......)))... ( -30.70)
>DroEre_CAF1 4571 118 - 1
CACUGAAUUAAAAGUUUUACGGGCUCAAACUUUUGCCAACAAACUUGUGGCAGUCGCAUAAAAUGCCUCCACUACCUC--UGAGCCUAAAAGUAUGCACACACGCGGCAACAAAGCCAAC
....................(((((((.....((((((.((....))))))))..((((...))))............--)))))))........((......))(((......)))... ( -26.20)
>DroYak_CAF1 4520 118 - 1
CACUGAAUUAAAAGUUUUACGGGCUCAAACUUUUGCCAACAAACUUGUGGCAGUCGCAUAAAAUGCCUCCACUACCCC--CGAGCCUAAAAGUAUGCACACACGCGGCAACAAAGCCAAC
....................((((((......((((((.((....))))))))..((((...))))............--.))))))........((......))(((......)))... ( -25.70)
>consensus
CACUGAAUUAAAAGUUUUACGGGCUCAAACUUUUGCCAACAAACUUGUGGCAGUCGCAUAAAAUGCCUCGACUACCCC__UGAGCCUAAAAGCAUGCACACACGCGGCAACAAAGCCAAC
.............(((((..((((((........((((.((....))))))((((((((...))))...))))........)))))).)))))..((......))(((......)))... (-25.44 = -25.80 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:38 2006