Locus 3676

Sequence ID 2R_DroMel_CAF1
Location 12,223,016 – 12,223,109
Length 93
Max. P 0.615133
window5980

overview

Window 0

Location 12,223,016 – 12,223,109
Length 93
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 79.53
Mean single sequence MFE -23.72
Consensus MFE -13.73
Energy contribution -14.70
Covariance contribution 0.97
Combinations/Pair 1.11
Mean z-score -1.75
Structure conservation index 0.58
SVM decision value 0.17
SVM RNA-class probability 0.615133
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12223016 93 + 20766785
CUGUAAAAACAGCAACACA-------ACA-------ACACAAACUCUGCCGGAGUUUGCCAUCGCAAAAUAGAGCGAUUAAAGUUGGCAGA--CAGCAGGUCAGAGGAG
((((....)))).......-------...-------.......(((((((...((((((((((((........)))).......)))))))--)....)).)))))... ( -27.01)
>DroSec_CAF1 84112 95 + 1
CUGUGAAAACAGCAACACA-------ACA-------ACACAAACUCUGCCGGAGUUUGCCCUCGCAAAAUAGAGCGAUUAAAGUUGGCAGACACAGCAGAUCGGAGGAG
((((....)))).......-------...-------...(((((((.....))))))).((((((........))((((...((((.......)))).)))).)))).. ( -24.50)
>DroSim_CAF1 80546 85 + 1
CUGUAAAAACAGCAACACA-------ACA-------ACACAAACUCUGCCGGAGUUUGCGCUCGCAAAAUAGAGCGAUUAAAGUUGGCA---------GAUCGG-GGUG
((((....)))).......-------...-------.(((....((((((((..((..(((((........)))))...))..))))))---------))....-.))) ( -25.50)
>DroEre_CAF1 92036 86 + 1
CUGUAAAAACAGCAACACA------------------CAUAAACUCUGCCGGAGUUUGCCCUCGCAAAAUAGAGCGAUUAAAGUUGGCAGA--C---AGGUCGGUUGGG
((((....)))).......------------------......(((.(((((.(((((((.((((........))))........))))))--)---...))))).))) ( -23.00)
>DroYak_CAF1 87093 103 + 1
CUGUAAAAACAGCAACACACACUCACACAGACGCACACACAAACUCCGCCGGAGUUUGCCCUCGGAAAAUAGAGCGAUUAAAGUUGGCAGA--C---AGGUCGC-GGGG
((((....))))...........................((((((((...))))))))(((((........))((((((...(((....))--)---.))))))-))). ( -22.50)
>DroAna_CAF1 78272 82 + 1
CUGUAAAAACAGCAACACA-------CAA-------CCACA---UC-----AGGUUUGCUCUGGCAAAAUAGAGCGAUUAAAGUUGGCAGA--C---AGGUCGUUAGGG
((((.....((((......-------..(-------((...---..-----.)))((((((((......)))))))).....))))....)--)---)).......... ( -19.80)
>consensus
CUGUAAAAACAGCAACACA_______ACA_______ACACAAACUCUGCCGGAGUUUGCCCUCGCAAAAUAGAGCGAUUAAAGUUGGCAGA__C___AGGUCGG_GGGG
((((....))))((((.......................(((((((.....)))))))...((((........)))).....))))....................... (-13.73 = -14.70 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:40 2006