Locus 3668

Sequence ID 2R_DroMel_CAF1
Location 12,201,267 – 12,201,371
Length 104
Max. P 0.730976
window5966

overview

Window 6

Location 12,201,267 – 12,201,371
Length 104
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 90.38
Mean single sequence MFE -18.37
Consensus MFE -15.72
Energy contribution -15.83
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -2.08
Structure conservation index 0.86
SVM decision value 0.42
SVM RNA-class probability 0.730976
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12201267 104 - 20766785
AAUUAACUUUAACCAAGAUGAAACAAUACUCUCUUGUGACUUGGGAUUGAAACAAGAGAGGAAUUUAAAUGAAGCCAUUAGAAAAUACCAAAAUUACCAUCCAA
................((((........(((((((((..(........)..)))))))))...(((.((((....)))).)))..............))))... ( -17.90)
>DroSec_CAF1 57428 104 - 1
AAUUAACUUUUACCAAGAUGAAACAGUACUCUCUUGUGGCUUAAGAAUCAUACAAGAGAGGAAUUUAAAUGAAGGCAUUACAAAAUAUGAAAAUUACCAUCUAA
...............(((((........((((((((((............)))))))))).......((((....))))..................))))).. ( -18.60)
>DroSim_CAF1 57539 104 - 1
AAUUAACUUUUACCAAGAUGAAACAGUACUCUCUUGUGGCUUAAGAUUCAUACAAGAGAGGAAUUUAAAUGAAGAUAUUAGAAAAUAUAAAAAUUACCAUCUAA
...............(((((........((((((((((............)))))))))).......(((....(((((....)))))....)))..))))).. ( -18.60)
>consensus
AAUUAACUUUUACCAAGAUGAAACAGUACUCUCUUGUGGCUUAAGAUUCAUACAAGAGAGGAAUUUAAAUGAAGACAUUAGAAAAUAUAAAAAUUACCAUCUAA
................((((........((((((((((............)))))))))).......((((....))))..................))))... (-15.72 = -15.83 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:21 2006