Locus 3667

Sequence ID 2R_DroMel_CAF1
Location 12,200,380 – 12,200,474
Length 94
Max. P 0.566096
window5965

overview

Window 5

Location 12,200,380 – 12,200,474
Length 94
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 81.97
Mean single sequence MFE -26.90
Consensus MFE -16.22
Energy contribution -18.80
Covariance contribution 2.58
Combinations/Pair 1.21
Mean z-score -1.94
Structure conservation index 0.60
SVM decision value 0.06
SVM RNA-class probability 0.566096
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12200380 94 - 20766785
GCUGAUGGUAUUGGUUGAGGGGCUUGUG--AAGGGGGCUUGGGGCGGUUAAGCAUUUGCUAACAGUCCAGUGAACCGGUAAUCAAAGCAAAAUCAG
.(((((.((.(((((((.(((((((...--....)))))..((((.((((.((....)))))).))))......))..))))))).))...))))) ( -28.00)
>DroPse_CAF1 62819 88 - 1
UGUGGUGG--------AAGGGGUGUGGGGGGUGGGGGCAGUGGAACGUUAAGCAUUUGCUAACAGUCCAGUGAACCGGUAAUCAAAGCAAAAUCAC
.(((((..--------....(.(.(((..(.(((...((.((((..((((.((....))))))..)))).))..))).)..))).).)...))))) ( -23.70)
>DroSim_CAF1 56660 94 - 1
GCUGAUGGUAUUGGUUAAGGGGCUUGUG--GAGGGGAGGUGGGGCGGUUAAGCAUUUGCUAACAGUCCAGUGAACCGGUAAUCAAAGCAAAAUCAG
.(((((.((.(((((((.((..(...((--((..(..((..((((......)).))..))..)..))))..)..))..))))))).))...))))) ( -29.70)
>DroEre_CAF1 69529 94 - 1
GAUGAUGGUGUUGGUUAAGGGGUCUUUG--GAGGGAGCUUGGGACGGUUAAGCAUUUGCUAACAGUCCAGUGAACCGGUAAUCAAAGCAAAAUCAG
..((((.((.(((((((..((.((....--(((....))).((((.((((.((....)))))).))))...)).))..))))))).))...)))). ( -27.40)
>DroYak_CAF1 64365 93 - 1
AGUGAGGGUGUUGGUUAAGGGGUUUUUG--GAGGG-GCUUGGGGCGGUUAAGCAUUUGCUAACAGUCCAGUGAACCGGUAAUCAAAGCAAAAUCAG
..(((..((.(((((((...(((((...--...((-(((...(((((........)))))...)))))...)))))..))))))).))....))). ( -25.40)
>DroPer_CAF1 63426 88 - 1
UGUGGUGG--------AAGGGGUGUGGGGGGUGGGGGCAGUGGAACGUUAAGCAUUUGCUAACAGUCCAGUGAACCGGUAAUCAAAGCCAAAUCAC
.(((((..--------...((.(.(((..(.(((...((.((((..((((.((....))))))..)))).))..))).)..))).).))..))))) ( -27.20)
>consensus
GGUGAUGGU_UUGGUUAAGGGGUUUGUG__GAGGGGGCUUGGGACGGUUAAGCAUUUGCUAACAGUCCAGUGAACCGGUAAUCAAAGCAAAAUCAG
.(((((.((.(((((((..((.........(((....))).((((.((((.((....)))))).))))......))..))))))).))...))))) (-16.22 = -18.80 +   2.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:19 2006