Locus 3663

Sequence ID 2R_DroMel_CAF1
Location 12,163,052 – 12,163,160
Length 108
Max. P 0.818013
window5961

overview

Window 1

Location 12,163,052 – 12,163,160
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 82.35
Mean single sequence MFE -45.67
Consensus MFE -29.28
Energy contribution -31.45
Covariance contribution 2.17
Combinations/Pair 1.27
Mean z-score -2.68
Structure conservation index 0.64
SVM decision value 0.67
SVM RNA-class probability 0.818013
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12163052 108 - 20766785
GACUUCUCUGAGGUUCCGGUGGAUAGCCAUAGCCGUGGGGAUAUGACCCACUCGAGUCGUAGCUAUCCCUGGAGCUAUAGUUCGAGGAAGUCUGCUGGGACAACGGAC
......((((..(((((((..(((..((......(((((.......)))))(((((..((((((........))))))..)))))))..)))..)))))))..)))). ( -48.00)
>DroSec_CAF1 19417 108 - 1
GACUUCUCUGGGGUUCCGGGGGAUAGCCAUAGCCGUGGGGAUAUGACCCACUGGAGUCGUAGCUAUCCCUGGAGCUAUAGUUCGAGGAAGUCUGCUGGGACAGCGGAC
..((((.(((.((((((((((.(((((.((..(((((((.......))))).))....)).))))))))))))))).)))...))))..((((((((...)))))))) ( -50.80)
>DroEre_CAF1 24856 108 - 1
GACUUCUCUGGGGUUCCGGGGGAUAGCCAUAGCCGUGGGGAUAUGACCCACUGGAGUCGUAGCUAUCCCUGGAGCUAUAGUUCGAGGAAGUCUGCUGAGACAACGGAC
((((((((((.((((((((((.(((((.((..(((((((.......))))).))....)).))))))))))))))).))).....)))))))..(((......))).. ( -45.20)
>DroYak_CAF1 25364 108 - 1
GACUUCUCUGCGGCUCUGGGGGAUAGCCAUAGCCGUGUGGAUAUGACCCACUGGAAUCGUAGCUAUCCCUGGAGCUAUAGUUCGAGGAAGUCUGCUGAGACAACGGAC
((((((((((..((((..(((.(((((.((..(((.((((.......)))))))....)).))))))))..))))..))).....)))))))..(((......))).. ( -42.40)
>DroMoj_CAF1 26009 96 - 1
GGCUGCGCUGCGGCU------------CAUGGCCAUGCGGAUAGGAUGAGCUGGAGUCGUAGCUGUCGCGCGAGCUGUAAUUGGAGGAGGUCUGCUGCGAGAGCGGGC
(.(((((((((((((------------(.(((((((.(.....).))).))))))))))))))(.((((((((.((.(.......).)).)).)).)))).))))).) ( -41.60)
>DroAna_CAF1 19563 108 - 1
GACUCUUCUGCGGCUCUGGCGGAUAACCAUAACCGUGCGGAUAGGAGCCGCUGGAGUCGUAGCUGUCCCUGGAGCUGUAAUUGGAGGAGGUCUGCUGGGAAAGUGGAC
..((((((((((((((..((((....((.((.((....)).))))..))))..)))))))((((........))))......)))))))(((..((.....))..))) ( -46.00)
>consensus
GACUUCUCUGCGGCUCCGGGGGAUAGCCAUAGCCGUGGGGAUAUGACCCACUGGAGUCGUAGCUAUCCCUGGAGCUAUAGUUCGAGGAAGUCUGCUGGGACAACGGAC
((((((((((.((((((((.(((((((.((..(((((((.......))))).))....)).))))))))))))))).))).....)))))))..(((......))).. (-29.28 = -31.45 +   2.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:15 2006