| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,141,636 – 12,141,729 |
| Length | 93 |
| Max. P | 0.998367 |
| Location | 12,141,636 – 12,141,729 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 71.66 |
| Mean single sequence MFE | -20.77 |
| Consensus MFE | -16.78 |
| Energy contribution | -16.89 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.81 |
| SVM decision value | 3.08 |
| SVM RNA-class probability | 0.998367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12141636 93 + 20766785 UGUGUGUGUGUGUAUGCACUUCGGUAAGACA--------UAUAUUCUUACUUUAGAUGCCGCGGCACAACCAUAAUAGGUAAAAG-----UAAAAAAAAAGUUCUG ..((((..(((((..(((((..(((((((..--------.....)))))))..)).)))....)))))..))))...........-----................ ( -20.00) >DroSec_CAF1 28568 101 + 1 UGUGUGUGUGUGUAUGCACUUCGGUAAGAUAUAUAUUCAUAUAUUCUUACUUUAGAUGCCGCGGCACAACCAUAAUAGGUAAAAG-----UAAAAAAAGAAGUAUU ..((((..(((((..(((((..((((((((((((....))))).)))))))..)).)))....)))))..))))...........-----................ ( -22.50) >DroAna_CAF1 26657 97 + 1 CUUCUGUGUGUA-AUGCAUUUGAGUAAGUUU-AU-------UUCCCUUACUUGAGAUGCCUCGGUACAACCAUAAUAGAUACACAUUCAACAAAAAAAAUAAUAUU ....(((((((.-..(((((((((((((...-..-------....))))))).))))))...((.....)).......)))))))..................... ( -19.80) >consensus UGUGUGUGUGUGUAUGCACUUCGGUAAGAUA_AU_____UAUAUUCUUACUUUAGAUGCCGCGGCACAACCAUAAUAGGUAAAAG_____UAAAAAAAAAAAUAUU ..((((..(((((..(((((..(((((((...............)))))))..)).)))....)))))..))))................................ (-16.78 = -16.89 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:07 2006